PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c16_23260V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family NAC
Protein Properties Length: 511aa    MW: 57071 Da    PI: 6.612
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c16_23260V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1546.7e-48291602128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k....kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                          pGfrF+Ptdeelv +yLk+ v+g+++e+ e i+ +d+y+++Pw+Lp +    ++ ++e+ew fF++rdkky++g r+nr+t+sgyWkatg
  Pp3c16_23260V3.2.p  29 LPGFRFQPTDEELVGFYLKNMVTGNRTEV-ELINVLDLYRYDPWELPgSrfamAAMQGEREWLFFCPRDKKYPNGARPNRVTTSGYWKATG 118
                         59************************999.89**************95367664445788******************************* PP

                 NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +d++v ++ +++ +glkktLvfy+g+apkg kt+W+m+eyrl
  Pp3c16_23260V3.2.p 119 TDRPVRRAhDSRCIGLKKTLVFYTGKAPKGLKTEWIMNEYRL 160
                         *****99867788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-5223195IPR003441NAC domain
PROSITE profilePS5100552.85128195IPR003441NAC domain
PfamPF023652.7E-2430160IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MWNQRQAWDS KVLTQSSSPD LALHGMASLP GFRFQPTDEE LVGFYLKNMV TGNRTEVELI  60
NVLDLYRYDP WELPGSRFAM AAMQGEREWL FFCPRDKKYP NGARPNRVTT SGYWKATGTD  120
RPVRRAHDSR CIGLKKTLVF YTGKAPKGLK TEWIMNEYRL PVNIEYFCRT LDLPYNSSAP  180
LMDGREIALC RIYKKPMQIN LSYPNLFSEF TTMDHGDDSS CQFKSSEGEV TGPAALCQNN  240
SILHQSSCDA VLSQPTPSSE WSSSPTSPVS YNPVCYGPSR WSFTNEMDNL CDTASPRFRG  300
QNPMQTLWPT SQYEVPQECQ SSFGGRGVKP ENTSQSLHSS LLCPIPSSEN AHFIQSVFDI  360
KRTNLETQYH DESVFLDAST NKAATENFTD SIPKSNGLRD IVSNRGGILP VEQVVDRLSW  420
LGEQGLDLTP AVRPDAGFQP CGNDSTLTNI NWPPKKSSRP SQLPTPAAKD TVTDLQGSAP  480
TLLFNQCIRN SQQSWLKTIA APSARYALSD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-473019519165NO APICAL MERISTEM PROTEIN
1ut4_B4e-473019519165NO APICAL MERISTEM PROTEIN
1ut7_A4e-473019519165NO APICAL MERISTEM PROTEIN
1ut7_B4e-473019519165NO APICAL MERISTEM PROTEIN
4dul_A4e-473019519165NAC domain-containing protein 19
4dul_B4e-473019519165NAC domain-containing protein 19
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024398320.10.0NAC domain-containing protein 77-like
TrEMBLA0A2K1J9R80.0A0A2K1J9R8_PHYPA; Uncharacterized protein
STRINGPP1S4_283V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.11e-63NAC domain containing protein 35