PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c16_21680V3.3.p
Common NamePHYPADRAFT_64941
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 482aa    MW: 53236.4 Da    PI: 7.3428
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c16_21680V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.51.6e-10380427355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         ++h  +ErrRR + ++ f+ Lr+l+P  +      K +Ka+iL  A+ Y+k+Lq
  Pp3c16_21680V3.3.p 380 TNHMLAERRRRVKQKENFNALRKLVPIiS------KADKASILGDAIFYLKDLQ 427
                         68999**********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.405377426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-8380427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-16380453IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.9E-16380445IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.39E-11380431No hitNo description
SMARTSM003533.8E-11383432IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MERIRIFITE RILPALLGTS QSPPNSPPIV YNIGSPFSSY SSMGHLSGDL NYQEFDPNSL  60
NQQMRRLTKA PTSLNTVEMG SGSDTDLLLD PALWTIPTTS KPTCGILQSQ PADQMPPQSI  120
PCRGQHRSQS ATTSTSGSSL EDRFNTRLSD NSPEQLHMSQ CMTSSVRCNS SPNSRSLPRG  180
GGSPHSPESM NELHDTNTDP ITAFQSLPQH EGSQKAFSFM QNEEVELSTQ EDLQHVYNPS  240
LKSGNASERN LLRSFASILA EDHGEQPDSK SCPRAHVLAP IFNTNFDGSS QKLVRKAVEI  300
MKQIPNLQQG IQASGSAPPN IEQQQPPLAS CSSPKASKDA DEARDPFGQD APWSGRKRPC  360
RGSRIPRTDQ VHRAHGEAAT NHMLAERRRR VKQKENFNAL RKLVPIISKA DKASILGDAI  420
FYLKDLQKQL EELEAISTQT ENQYKILRSS YNNLQRQNEE LEAIARNDAL CHTIPTRLNS  480
C*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024398219.10.0uncharacterized protein LOC112293242 isoform X2
RefseqXP_024398220.10.0uncharacterized protein LOC112293242 isoform X3
RefseqXP_024398221.10.0uncharacterized protein LOC112293242 isoform X3
TrEMBLA0A2K1J9K70.0A0A2K1J9K7_PHYPA; Uncharacterized protein
STRINGPP1S4_111V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.39e-12bHLH family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]