PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c16_21680V3.2.p
Common NamePHYPADRAFT_64941
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 558aa    MW: 61429.7 Da    PI: 6.9377
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c16_21680V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.21.9e-10456503355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         ++h  +ErrRR + ++ f+ Lr+l+P  +      K +Ka+iL  A+ Y+k+Lq
  Pp3c16_21680V3.2.p 456 TNHMLAERRRRVKQKENFNALRKLVPIiS------KADKASILGDAIFYLKDLQ 503
                         68999**********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.9E-13581IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088814.405453502IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.44E-11456507No hitNo description
Gene3DG3DSA:4.10.280.101.4E-15456521IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-16456529IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.9E-8456503IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-11459508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MYKSCTFTPN FGSVGTAYAE GRHIWLNGAA VHLSAGSTEQ AQFLRHAGIQ TAICIPWSDI  60
VLELGTCENV AEDLKLMERI RIFITERILP ALLGTSQSPP NSPPIVYNIG SPFSSYSSMG  120
HLSGDLNYQE FDPNSLNQQM RRLTKAPTSL NTVEMGSGSD TDLLLDPALW TIPTTSKPTC  180
GILQSQPADQ MPPQSIPCRG QHRSQSATTS TSGSSLEDRF NTRLSDNSPE QLHMSQCMTS  240
SVRCNSSPNS RSLPRGGGSP HSPESMNELH DTNTDPITAF QSLPQHEGSQ KAFSFMQNEE  300
VELSTQEDLQ HVYNPSLKSG NASERNLLRS FASILAEDHG EQPDSKSCPR AHVLAPIFNT  360
NFDGSSQKLV RKAVEIMKQI PNLQQGIQAS GSAPPNIEQQ QPPLASCSSP KASKDADEAR  420
DPFGQDAPWS GRKRPCRGSR IPRTDQVHRA HGEAATNHML AERRRRVKQK ENFNALRKLV  480
PIISKADKAS ILGDAIFYLK DLQKQLEELE AISTQTENQY KILRSSYNNL QRQNEELEAI  540
ARNDALCHTI PTRLNSC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024398219.10.0uncharacterized protein LOC112293242 isoform X2
TrEMBLA0A2K1J9K70.0A0A2K1J9K7_PHYPA; Uncharacterized protein
STRINGPP1S4_111V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-11bHLH family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]