PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c16_21590V3.2.p
Common NamePHYPADRAFT_64936
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 516aa    MW: 55917.6 Da    PI: 6.8781
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c16_21590V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.32.7e-08372413955
                         HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          r RR++i +++  L +l+P  +      K++ a++L +A+eY+k Lq
  Pp3c16_21590V3.2.p 372 ARHRRKKISERIRVLEKLIPGgN------KMDTATMLDEAIEYVKFLQ 413
                         699*****************955......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.399363412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.00E-9366417No hitNo description
SuperFamilySSF474597.85E-14368422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-13368422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-12369418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-5373413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MMGDMHHVHR GIRPSDVPLY DDTGVQDLNS FTPAYQQVIP GSHGVPVPVS WSATDPTLLL  60
NEQSSGKGLL SWQAESCVQQ SLQYSQAGFD TVGHVEMMAA LNADPYKSLG NYELTQLVQL  120
YSTYYQDPYP YSNLSFSDSV TFQPDVSLPT SSDCLQVVSS SGSDSLSTTE TWRSETSGGC  180
APSSYENVLT NLNESSSVTL VRDSHDSNFQ PQRPHLDMLK HDQAVSLPPV HEMWIQNQIQ  240
AGVGRNTLHT VLALTQDMPS YDVLPVKSSS DPPTFKRPRT WGEALQQGSA HCDSLRHSLA  300
SKTSPTLDST QLSSLSRSIP SRQFSFQGKL SPSHLSGAGG STYSRLPGLP EEGRLCNGKP  360
AATSVEPQSV AARHRRKKIS ERIRVLEKLI PGGNKMDTAT MLDEAIEYVK FLQLQVQILE  420
SDTLDNAPLT ASNGQNLPLQ GSRAKQGLKR KGDTSLGGDS SPALSVRAAT SPLILSEVLQ  480
QQLFKQKLCL VSIRQCPPRA ASTQAAAAPS VLRKN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024398362.10.0uncharacterized protein LOC112293319
TrEMBLA0A2K1J9K30.0A0A2K1J9K3_PHYPA; Uncharacterized protein
STRINGPP1S4_99V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.19e-21bHLH family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]