PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c16_19970V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 535aa    MW: 57962.3 Da    PI: 5.1044
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c16_19970V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.72.3e-094544941055
                         HHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  10 rrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         r RR++iN+++  L+ l+P+ a      K++ +++L +A++Y+k Lq
  Pp3c16_19970V3.2.p 454 RHRREKINERLKSLQNLVPNgA------KVDIVTMLDEAIHYVKFLQ 494
                         89******************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.63E-14443506IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.729444493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-14448503IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.2E-13450499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.75E-10453498No hitNo description
PfamPF000101.6E-6454494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MSSVEEQRET MVQPYVSSMD SGSTSGRQTP SCVVQQGSNT FETSNLWEEW TQASNGDDTV  60
STSNFLPEIS SFTSSRLSFQ QSDSLTTWMS GFPPLSQTAL SPDLSHSSDP VDHPPAFMQE  120
GLGPGDSILD YSPALTEMYP KSSSKHNSSD CLPYPAASAP DKKMTDHELG SAISLAYDRG  180
TVSRQLLRAL GPLSPSSPLA LQNGLQNPLG DPWDASPSAM PWPMATTGHA YGPGATRTSI  240
PDHLANAINH LEGIAPSSAS HASKPRHTDI FIAPNGTFDS TPGGWTPQYY DGSVTTDESV  300
KAMKLIASLR EAGHAEATIG FCTESKPSFL RGGDRTTSPV DSFFGKCVGA KTSIKQACSG  360
KHPLELEEIV DSENSELNPT QLKRSKLFEN HPNALWSDQS MNGRELRSYS HLVGSSLTAS  420
QPMDIIAIGP ALNTDGKPRA KRGSATDPQS VYARHRREKI NERLKSLQNL VPNGAKVDIV  480
TMLDEAIHYV KFLQNQVELL KSDELWIYAT PNKYNGMDIS DLSDMYLQEL ESRA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1563971e-107EF156397.1 Physcomitrella patens Rhd6-like 5 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024398938.10.0uncharacterized protein LOC112293574 isoform X3
TrEMBLA0A2K1J9E00.0A0A2K1J9E0_PHYPA; Uncharacterized protein
STRINGPP1S327_51V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.14e-39ROOT HAIR DEFECTIVE 6-LIKE 2