PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c16_19830V3.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | NAC | ||||||||
Protein Properties | Length: 420aa MW: 46986.6 Da PI: 6.824 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 180.1 | 5.8e-56 | 21 | 148 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeelvv+yL++k+++ +e+ ++i evd++k+ePwdLp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWkatgkd++ Pp3c16_19830V3.4.p 21 LPPGFRFHPTDEELVVYYLARKIREPGFEV-KTICEVDLNKCEPWDLPEKAKLGEKEWYFFSLRDRKYPTGMRTNRATEKGYWKATGKDRD 110 79****************************.88***************99999************************************** PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 v+++ +++lvg+kktLvfy+grap+g+kt+W+mheyrl Pp3c16_19830V3.4.p 111 VMNSgTHALVGMKKTLVFYRGRAPRGVKTHWIMHEYRL 148 ***966677***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.58E-63 | 18 | 177 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.873 | 21 | 177 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-28 | 22 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MTSMCNGTKT IGKQQECTMD LPPGFRFHPT DEELVVYYLA RKIREPGFEV KTICEVDLNK 60 CEPWDLPEKA KLGEKEWYFF SLRDRKYPTG MRTNRATEKG YWKATGKDRD VMNSGTHALV 120 GMKKTLVFYR GRAPRGVKTH WIMHEYRLTS DFPGHFNGQQ PQGSMHDEWV VCRVFQKIAG 180 NKKPGFMCGD MPYQLTDSYS VLHRESSPNP TVTNSGECDA CTGTDSCYNC QDNFAGGVPL 240 AQGDVTSVPA PEWVHVSDSK APNSAAADIS NSMKESQYNQ NAISLNMLNY PTVPQTMVKH 300 SLTSMKSWDH RHNNNGMRAK PEPFYATNEG EDEAQSIGRL NVNHATWPSD NVPFGQEFPY 360 DSPLTPLSTV TGDSGQSFCL ANGRLGNDHQ FRAFNRLLAY SGFPAMSGSI DGLQSEWAY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 3e-55 | 19 | 183 | 18 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-55 | 19 | 183 | 18 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-55 | 19 | 183 | 18 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-55 | 19 | 183 | 18 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-55 | 19 | 183 | 18 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-55 | 19 | 183 | 18 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-55 | 19 | 183 | 18 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-55 | 19 | 183 | 18 | 174 | NAC domain-containing protein 19 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00663 | PBM | 25215497 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024399449.1 | 0.0 | NAC domain-containing protein 79-like | ||||
Refseq | XP_024399450.1 | 0.0 | NAC domain-containing protein 79-like | ||||
Refseq | XP_024399451.1 | 0.0 | NAC domain-containing protein 79-like | ||||
TrEMBL | A0A2K1J9E4 | 0.0 | A0A2K1J9E4_PHYPA; Uncharacterized protein | ||||
STRING | PP1S327_64V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07680.1 | 1e-77 | NAC domain containing protein 80 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c16_19830V3.4.p |