PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c16_15450V3.4.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family HD-ZIP
Protein Properties Length: 859aa    MW: 93837 Da    PI: 6.32
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c16_15450V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.25.8e-183189357
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                        k  ++t+eq+e+Le++++++++ps  +r +L k++    +++ +q+kvWFqNrR +ek+
  Pp3c16_15450V3.4.p 31 KYVRYTNEQVEALERVYHECPKPSSIRRHQLIKECpilaNIEPKQIKVWFQNRRCREKQ 89
                        5678*****************************************************97 PP
2START157.61e-491893962204
                         HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EE CS
               START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..ga 90 
                         +aee+++++++ka+ ++  W +++ +++g++ + +++ s+++ g a+ra+g+   +    v+e+l+d++ W+++++++e+l ++ +g  g+
  Pp3c16_15450V3.4.p 189 MAEETLTDFLAKATGTAVDWIQLPGMKPGPDAIGIIAISHGCVGIAARACGLAALDFS-KVAEILKDRPGWSQDCRRMEVLGTLPTGngGT 278
                         57999*****************************************************.8888888888********************** PP

                         EEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
               START  91 lqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                         ++l +++++a+++l+p Rdf ++Ry+  l++g +vi+++S++ + + p+    +s++Rae++pSg+li+p+++g++ +++v+hv+++ +++
  Pp3c16_15450V3.4.p 279 IELLYTQMYAPTTLAPaRDFCTLRYTTLLEDGNLVICERSLTGKHNGPTmppVQSFIRAEMFPSGYLIRPCEGGGCIIHIVDHVEYEPWSV 369
                         ******************************************999988888899************************************* PP

                         HHHHHHHHHHHHHHHHHHHHHHTXXXX CS
               START 178 hwllrslvksglaegaktwvatlqrqc 204
                         +++lr+l++s ++ + k + a+l++++
  Pp3c16_15450V3.4.p 370 PEVLRPLYESPAVLAHKSTIAALRYLR 396
                         **********************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.4992690IPR001356Homeobox domain
SuperFamilySSF466892.87E-172693IPR009057Homeodomain-like
SMARTSM003898.9E-152894IPR001356Homeobox domain
CDDcd000863.59E-163191No hitNo description
PfamPF000461.7E-153289IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.4E-183389IPR009057Homeodomain-like
CDDcd146860.0010183119No hitNo description
PROSITE profilePS5084822.643179379IPR002913START domain
CDDcd088752.01E-79183399No hitNo description
Gene3DG3DSA:3.30.530.202.5E-20188379IPR023393START-like domain
SMARTSM002343.1E-41188398IPR002913START domain
SuperFamilySSF559612.33E-34189399No hitNo description
PfamPF018524.4E-47190396IPR002913START domain
PfamPF086701.4E-45717858IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 859 aa     Download sequence    Send to blast
MFHMENDHHT FGSCMEKVDP DKYKGMDSSG KYVRYTNEQV EALERVYHEC PKPSSIRRHQ  60
LIKECPILAN IEPKQIKVWF QNRRCREKQR KEATRLVSVN AKLTALNKLL MEENERLAKH  120
ASQLTLDNHA LRQQLPNLPV PDGKCRLSGQ AGVASTDTSC DSAVTGGLPQ HLTSQHSSPD  180
ASPAGLLSMA EETLTDFLAK ATGTAVDWIQ LPGMKPGPDA IGIIAISHGC VGIAARACGL  240
AALDFSKVAE ILKDRPGWSQ DCRRMEVLGT LPTGNGGTIE LLYTQMYAPT TLAPARDFCT  300
LRYTTLLEDG NLVICERSLT GKHNGPTMPP VQSFIRAEMF PSGYLIRPCE GGGCIIHIVD  360
HVEYEPWSVP EVLRPLYESP AVLAHKSTIA ALRYLRRIAA EESGEIIIRN GQHPAVIRTL  420
SQRLTKGFND AVNGFGDDGW VPMESDGMDD VSVMLNATPK SMEGQIATDK LLFSLGGGIL  480
CAKASMLLQN VPPALLIRFL REHRSEWADH EIDANAATAF RGASNGHVSR GRMSHVQLPL  540
PLAQFGEQGE FLEVVKLEGH SAVQHSVLSR DSFLLQLCSG IEEGAVGAGA QLVFAPIDAA  600
VSEDIPLLPS GFRVIPVDSS VVDGIGLNRT LDLASTLEDH EAGLNGESKS NGSSSQVRSV  660
LTIAFQFAYE VHTRETCAVM ARQYVRTVVA SVQRVAMALA PSRGQPRPAL GNSDAISLAR  720
HILSSYRVQL GMDLVRPEVG GTEALFKVFW HHSDAIVCCA WKGTPEFVFA NRAGLEMFET  780
TSSSLQDLAW DKTLDEDSLK LSYATFTQVL QQGYCCLPSG VRISSTGRTV TYERALAWKV  840
LDDDETTQCI AFLFMNWS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.162180.0gametophore
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ6572020.0DQ657202.1 Physcomitrella patens class III HD-Zip protein HB12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024399215.10.0homeobox-leucine zipper protein HOX32-like isoform X1
RefseqXP_024399216.10.0homeobox-leucine zipper protein HOX32-like isoform X1
RefseqXP_024399218.10.0homeobox-leucine zipper protein HOX32-like isoform X1
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A2K1J8R90.0A0A2K1J8R9_PHYPA; Uncharacterized protein
STRINGPP1S15_11V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Prigge MJ,Clark SE
    Evolution of the class III HD-Zip gene family in land plants.
    Evol. Dev., 2006 Jul-Aug. 8(4): p. 350-61
    [PMID:16805899]
  3. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  4. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]