PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c16_13260V3.2.p | ||||||||
Common Name | PHYPADRAFT_176040 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 268aa MW: 28880.3 Da PI: 4.6892 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.6 | 5.5e-17 | 51 | 99 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +kGVr + +g+Wv eIrdp++ ++r++lg+f tae+Aa+a++aa +l+g Pp3c16_13260V3.2.p 51 FKGVRMRA-WGKWVTEIRDPTS---KARIWLGSFSTAEMAARAYDAAVVCLKG 99 79***998.**********854...5*********************999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 5.4E-31 | 50 | 114 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.733 | 50 | 108 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-9 | 51 | 97 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.5E-28 | 51 | 110 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.9E-9 | 51 | 62 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-18 | 51 | 110 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.73E-28 | 51 | 110 | No hit | No description |
PRINTS | PR00367 | 4.9E-9 | 73 | 89 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MVEKRNAATL KAKRGGALLT HLTTPSSSIA KKSAFGGFDR FPCSSSQQAA FKGVRMRAWG 60 KWVTEIRDPT SKARIWLGSF STAEMAARAY DAAVVCLKGP SAPELNFPDS LPNYIPNSRS 120 PKDIQAAAAA AATASLPAAT PLAIGADSRS HEVQRQVSED WIFPSLSCIP ELHEDMTLQD 180 FEIAPEMKVD AGSSSAAMED WINNELFGGL EESSNNESDL YQELLKLAEC LDTAESSCAI 240 SQHESISGLN FSRQDNTGYD SSLWCFT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-13 | 45 | 108 | 9 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.13049 | 0.0 | gametophore |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024399690.1 | 0.0 | ethylene-responsive transcription factor ERF017-like | ||||
TrEMBL | A9RL40 | 0.0 | A9RL40_PHYPA; Predicted protein | ||||
STRING | PP1S15_189V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16750.1 | 6e-27 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c16_13260V3.2.p |
Entrez Gene | 5917945 |
Publications ? help Back to Top | |||
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