PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c16_10660V3.1.p
Common NamePHYPADRAFT_233823
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family LFY
Protein Properties Length: 535aa    MW: 60527.1 Da    PI: 6.061
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c16_10660V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY31.32.8e-104214326132
             FLO_LFY  26 lleeaavseapleaaaaaaarklreleelfkayGvryltvakiaelG.ftvstLvdmkdeelddlmkslseifrldllvGeryGikaavra 115
                          +e++++ +ap+++  +++++   +le++++++     ++a   +lG ftv tLv+m++ee ++    l e+ r dl v + + ik avr 
  Pp3c16_10660V3.1.p  42 TMEDDSMDSAPSSSDFSTNNVYNARLEDILRGFAKDPKALA--HKLGdFTVRTLVGMNEEEYQK----LFELLRSDLSVADFFAIKVAVRE 126
                         4455556666666677777777889******9998877766..45666*************865....67899****************** PP

             FLO_LFY 116 errrleeeeaekkrrkl 132
                          ++r+++e+++ +  + 
  Pp3c16_10660V3.1.p 127 AKKRFNAESTSPRSAHS 143
                         ******99877776664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF813831.7E-8169211IPR001810F-box domain
PROSITE profilePS5018110.08169214IPR001810F-box domain
PfamPF006469.2E-6171202IPR001810F-box domain
Gene3DG3DSA:1.20.1280.501.4E-7171207No hitNo description
SMARTSM002560.0041175215IPR001810F-box domain
SuperFamilySSF1172812.48E-7240525No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016567Biological Processprotein ubiquitination
GO:0031146Biological ProcessSCF-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:0019005Cellular ComponentSCF ubiquitin ligase complex
GO:0004842Molecular Functionubiquitin-protein transferase activity
GO:0005515Molecular Functionprotein binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MLHWSSFEAH REGFLFLPTS RVGTISRHHQ LTLISQKICQ FTMEDDSMDS APSSSDFSTN  60
NVYNARLEDI LRGFAKDPKA LAHKLGDFTV RTLVGMNEEE YQKLFELLRS DLSVADFFAI  120
KVAVREAKKR FNAESTSPRS AHSTPRAGSA SGVTRPTVDI ASSSRVDVER PLPRLPEHVI  180
HMVLARLPVP SFLRMRAVCK DWWHLMYATS FLEICSKRSS ERSCFVFYER GKMVANGEGA  240
IYIPSSNKWL KLSLSFLPCN LKEPVLVTGG GGLLCFVCNK SESGSVIVVC NPVTKSWREL  300
PPLDVEDPED FMWYLAMVSI VVDEHSNSYK VILVSQTSYE PYNASWRTLV YSSLTKDWSR  360
PHSHYLGADV HNDTCEMWTP VECNGVLFEN FGTEYVWTYD LLRGTWRHIE LPIPSDSAEE  420
RGLVEIHGHL FRVLQTEDDD MKNIQIWELN PTDLSCLNVE FMPVELAVTF LDVSFTVLGI  480
HSIAGNDALC FLSLKGQSAL LYDLSERSWN WMPKFPLFKG SNSCCLNLRL DISA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024398779.10.0F-box/kelch-repeat protein At5g15710-like
TrEMBLA9SR450.0A9SR45_PHYPA; Predicted protein
STRINGPP1S50_82V6.10.0(Physcomitrella patens)
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]