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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c16_10660V3.1.p | ||||||||
Common Name | PHYPADRAFT_233823 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | LFY | ||||||||
Protein Properties | Length: 535aa MW: 60527.1 Da PI: 6.061 | ||||||||
Description | LFY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FLO_LFY | 31.3 | 2.8e-10 | 42 | 143 | 26 | 132 |
FLO_LFY 26 lleeaavseapleaaaaaaarklreleelfkayGvryltvakiaelG.ftvstLvdmkdeelddlmkslseifrldllvGeryGikaavra 115 +e++++ +ap+++ +++++ +le++++++ ++a +lG ftv tLv+m++ee ++ l e+ r dl v + + ik avr Pp3c16_10660V3.1.p 42 TMEDDSMDSAPSSSDFSTNNVYNARLEDILRGFAKDPKALA--HKLGdFTVRTLVGMNEEEYQK----LFELLRSDLSVADFFAIKVAVRE 126 4455556666666677777777889******9998877766..45666*************865....67899****************** PP FLO_LFY 116 errrleeeeaekkrrkl 132 ++r+++e+++ + + Pp3c16_10660V3.1.p 127 AKKRFNAESTSPRSAHS 143 ******99877776664 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF81383 | 1.7E-8 | 169 | 211 | IPR001810 | F-box domain |
PROSITE profile | PS50181 | 10.08 | 169 | 214 | IPR001810 | F-box domain |
Pfam | PF00646 | 9.2E-6 | 171 | 202 | IPR001810 | F-box domain |
Gene3D | G3DSA:1.20.1280.50 | 1.4E-7 | 171 | 207 | No hit | No description |
SMART | SM00256 | 0.0041 | 175 | 215 | IPR001810 | F-box domain |
SuperFamily | SSF117281 | 2.48E-7 | 240 | 525 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016567 | Biological Process | protein ubiquitination | ||||
GO:0031146 | Biological Process | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | ||||
GO:0019005 | Cellular Component | SCF ubiquitin ligase complex | ||||
GO:0004842 | Molecular Function | ubiquitin-protein transferase activity | ||||
GO:0005515 | Molecular Function | protein binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 535 aa Download sequence Send to blast |
MLHWSSFEAH REGFLFLPTS RVGTISRHHQ LTLISQKICQ FTMEDDSMDS APSSSDFSTN 60 NVYNARLEDI LRGFAKDPKA LAHKLGDFTV RTLVGMNEEE YQKLFELLRS DLSVADFFAI 120 KVAVREAKKR FNAESTSPRS AHSTPRAGSA SGVTRPTVDI ASSSRVDVER PLPRLPEHVI 180 HMVLARLPVP SFLRMRAVCK DWWHLMYATS FLEICSKRSS ERSCFVFYER GKMVANGEGA 240 IYIPSSNKWL KLSLSFLPCN LKEPVLVTGG GGLLCFVCNK SESGSVIVVC NPVTKSWREL 300 PPLDVEDPED FMWYLAMVSI VVDEHSNSYK VILVSQTSYE PYNASWRTLV YSSLTKDWSR 360 PHSHYLGADV HNDTCEMWTP VECNGVLFEN FGTEYVWTYD LLRGTWRHIE LPIPSDSAEE 420 RGLVEIHGHL FRVLQTEDDD MKNIQIWELN PTDLSCLNVE FMPVELAVTF LDVSFTVLGI 480 HSIAGNDALC FLSLKGQSAL LYDLSERSWN WMPKFPLFKG SNSCCLNLRL DISA* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024398779.1 | 0.0 | F-box/kelch-repeat protein At5g15710-like | ||||
TrEMBL | A9SR45 | 0.0 | A9SR45_PHYPA; Predicted protein | ||||
STRING | PP1S50_82V6.1 | 0.0 | (Physcomitrella patens) |
Link Out ? help Back to Top | |
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Phytozome | Pp3c16_10660V3.1.p |
Entrez Gene | 5932058 |
Publications ? help Back to Top | |||
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