PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c15_720V3.3.p
Common NamePHYPADRAFT_169502
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 761aa    MW: 82129.6 Da    PI: 7.5327
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c15_720V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH53.25.3e-17328377255
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       r +h++ E+rRR++iN++f+ Lr+l+P++    ++K +Ka+ L +++eYI+ Lq
  Pp3c15_720V3.3.p 328 RSKHSATEQRRRSKINDRFQMLRDLVPHS----DQKRDKASFLLEVIEYIQVLQ 377
                       889*************************9....9*****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.0E-22325392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.01E-17325388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.66326376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-14328377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.24E-15328381No hitNo description
SMARTSM003531.1E-12332382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 761 aa     Download sequence    Send to blast
MAFIAAVGHK QLGPDWAIGS PSSLGHNRYG EVVPEESAAQ QQREFYVVQK RHAMTQQQAE  60
RSQPHHFARR EDTKPSTHDF LSLYDKGAHQ LEIGSSSGLP SSLTTHDFLQ PLERSGTRST  120
YRDAPASREK QARVDTVQSR NSTPASAERN LPTVAPTYSN NQVPYAVNPN SMNRMVNEAD  180
ALRQGRGYSM VTLSSPDDHN GGPESSRGVE VAMDPEVANA RDNLAHWPGV SFKFDMPADL  240
TFPTGSQAVK GAVDNGHQSI PAIAKQWTYG IVDVPKRSIR PPSEDYEDED EDSSERPKGN  300
RKESISCKGD TAQRMDVKNG DMRGSTPRSK HSATEQRRRS KINDRFQMLR DLVPHSDQKR  360
DKASFLLEVI EYIQVLQEKV RKYETTEQGR HQERLKSMVW DICKQRGAAG SADEASQLNA  420
LIFAKDFNSG VGPVDVKPVT EANGDVRALR ASEQAALTSE VHSTAGINGQ QRSSRPACSI  480
HSCVSSLDGE KEHATAPTAQ PLAVGVPLQQ AIPLPYALSI VPSRLQSDQD GGRGTPGSNS  540
PAKEKLCDPD PVSSRENGSA RANSPDQLFE LRPRISPARQ AEQISGQQSK AELQTPAATA  600
VDRIDGAQTG QPSNGSASRQ SYGATYYQEN VSKPSRHSPA RQNGQIAPGD GSAASPCPTQ  660
PPPRIQGGVI NVSSVYSQSL LDTLTRALQS SGVDLSRANI SVQIDLGTNV ATAAADTSAK  720
VATTPESSAQ SHQSQGRTRP APVAAEPAPA LKRPKLENHE *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.42190.0gametophore| protonema
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1598706e-62DQ159870.1 Physcomitrella patens monodehydroascorbate reductase II (Mdhar2) gene, promoter region and complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024396708.10.0transcription factor BIM1-like isoform X3
TrEMBLA0A2K1JBG20.0A0A2K1JBG2_PHYPA; Uncharacterized protein
STRINGPP1S211_76V6.20.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.34e-32bHLH family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]