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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c15_720V3.1.p | ||||||||
Common Name | PHYPADRAFT_169502 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | bHLH | ||||||||
Protein Properties | Length: 763aa MW: 82336.8 Da PI: 7.7509 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 53.2 | 5.3e-17 | 330 | 379 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lr+l+P++ ++K +Ka+ L +++eYI+ Lq Pp3c15_720V3.1.p 330 RSKHSATEQRRRSKINDRFQMLRDLVPHS----DQKRDKASFLLEVIEYIQVLQ 379 889*************************9....9*****************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 5.0E-22 | 327 | 394 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.02E-17 | 327 | 390 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.66 | 328 | 378 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-14 | 330 | 379 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.11E-15 | 330 | 383 | No hit | No description |
SMART | SM00353 | 1.1E-12 | 334 | 384 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0009742 | Biological Process | brassinosteroid mediated signaling pathway | ||||
GO:1902448 | Biological Process | positive regulation of shade avoidance | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 763 aa Download sequence Send to blast |
MAFIAAVGHK QLGPDWAIGS PSSLGHNRYG EVVPEESAAQ QQREFYVVQK RHAMTQQQAE 60 RSQPHHFARR EDTKPSTHDF LSLYDKGAHQ LEIGSSSGLP SSLTTHDFLQ PLERSGTRST 120 YRDAPASREK QARVDTVQSR NSTPASAERN LPTVAPTYSN NQVPYAVNPN SMNRMVNEAD 180 ALRQGRGYSM VTLSSPDDHN GGPESSRGVE VAMDPEVANA RGQHNLAHWP GVSFKFDMPA 240 DLTFPTGSQA VKGAVDNGHQ SIPAIAKQWT YGIVDVPKRS IRPPSEDYED EDEDSSERPK 300 GNRKESISCK GDTAQRMDVK NGDMRGSTPR SKHSATEQRR RSKINDRFQM LRDLVPHSDQ 360 KRDKASFLLE VIEYIQVLQE KVRKYETTEQ GRHQERLKSM VWDICKQRGA AGSADEASQL 420 NALIFAKDFN SGVGPVDVKP VTEANGDVRA LRASEQAALT SEVHSTAGIN GQQRSSRPAC 480 SIHSCVSSLD GEKEHATAPT AQPLAVGVPL QQAIPLPYAL SIVPSRLQSD QDGGRGTPGS 540 NSPAKEKLCD PDPVSSRENG SARANSPDQL FELRPRISPA RQAEQISGQQ SKAELQTPAA 600 TAVDRIDGAQ TGQPSNGSAS RQSYGATYYQ ENVSKPSRHS PARQNGQIAP GDGSAASPCP 660 TQPPPRIQGG VINVSSVYSQ SLLDTLTRAL QSSGVDLSRA NISVQIDLGT NVATAAADTS 720 AKVATTPESS AQSHQSQGRT RPAPVAAEPA PALKRPKLEN HE* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.4219 | 0.0 | gametophore| protonema |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00498 | DAP | Transfer from AT5G08130 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ159870 | 6e-62 | DQ159870.1 Physcomitrella patens monodehydroascorbate reductase II (Mdhar2) gene, promoter region and complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024396709.1 | 0.0 | transcription factor BIM1-like isoform X4 | ||||
TrEMBL | A0A2K1JBG2 | 0.0 | A0A2K1JBG2_PHYPA; Uncharacterized protein | ||||
STRING | PP1S211_76V6.2 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1360 | 17 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08130.3 | 4e-32 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c15_720V3.1.p |
Entrez Gene | 5939997 |
Publications ? help Back to Top | |||
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