PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Binding Motif |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pp3c15_6750V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

CPP

Protein Properties

Length: 1270aa MW: 137181 Da PI: 8.2486

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c15_6750V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	47.4	3.8e-15	785	823	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnCkkskClk+YCeCfa g++C +C C dC+Nk e Pp3c15_6750V3.1.p 785 CKRCNCKKSKCLKLYCECFALGVYCVGSCACRDCFNKPE 823 799*********************************976 PP
2	TCR	50.2	5e-16	869	908	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnCkks ClkkYCeC++ag+ Cse C+Ce+C+Nk Pp3c15_6750V3.1.p 869 RHKRGCNCKKSLCLKKYCECYQAGVGCSEGCRCEGCMNKY 908 589***********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	2.5E-14	783	824	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	34.054	784	909	IPR005172	CRC domain
Pfam	PF03638	9.3E-11	786	821	IPR005172	CRC domain
SMART	SM01114	5.5E-17	869	910	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	2.3E-11	871	907	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 1270 aa Download sequence Send to blast
MMTRGSKMAA EKVDRGSDSG PEMGSPARRE PIPPVTNMQD SPLFKYLCEL SPIQPAKSVH 60 HAQTYNEMTF PQEHRIFASP RSARRSSTSS LKRFVAAESL SAQAPAEGRE TFGWHQTPTF 120 SRSTLSDNGP SPSPLNRRSD DNQVTPCSRR QTEEVHKSQP ESVRTEGLGT DVYVAENLGG 180 QRISGNPAHS NRGSTSGVMA RIAGTTASFQ SQYNDHQQLD LAVSAAMPSE MVRCINGKGD 240 LLDGAGSQHN FAIDRSQSAS SLMPHAIDCI LSSQESKCPE QNDHRRVSMA SSSHVEGNGL 300 NFSPDAKGSP ELDRETTAMA YFLAGNQDLG QDNVEEWSED SSEVVVPRLP VRPTPGYSEK 360 PSDMINERAV KQEKQMLDAI TPQSGLITST EDGHDTGLIS TTDNASNQQS VLSHKVDNAG 420 QRGFRRRCLD FDASVARRKS LGSMGGRKSL GSRLKDCSGS SIADDNSLSS GFAKVATSDA 480 TTRLLSSGND FSNSKDSTTV ERDSGTDSRG IPARADTFEA TAMVPLPSCS FQKSMDVLNV 540 KAGEAQNRKS QNPGATHGGN VSEGLRRSPR NRSSGIGLHL NSLTSTVSFK RDFSSAGGES 600 SKGVLATVLG LQFQASSSPR EDSCVEGPGS TGLAANINQN LNPGVDKHAA ENSIQGLTNK 660 PDYHTQVPSL LERRTLTELN GADTALPLIS IKKVNVPAPD FSALNIENLP PLEESFSLTP 720 GTNLPRLVSP RGLKRSPPHQ QELIPRPDGE AVEELLGSPQ SSKRRRLSRR KFTESSQSEK 780 SGGGCKRCNC KKSKCLKLYC ECFALGVYCV GSCACRDCFN KPEYIETVIN TRQQIESRNP 840 LAFAPKIVQG AEPSPVPGDE ALDTPASARH KRGCNCKKSL CLKKYCECYQ AGVGCSEGCR 900 CEGCMNKYGK KEGPEGDEKG GEQALSTRED SQVEDPIEFL NRMSGKSDRL CDSSSNQNLS 960 PITPTFEYDS LGRPIHRLRT SLRKRADSSD KPCRSLLSQP VSRPPNSPTR FSHALDTFHL 1020 VPPYQGHSDT EFSMSGAGDS PITTPTFARM GHLSPSWEGL GDLCTLTPMQ TLAPLRLTPG 1080 SSCVTTERPG ASPAFRSHMT ESPYQAASST NVHQRHTSSR HWSPHSPRFR HPAPRSPLRF 1140 DTPRQSQLSC IDQTHSAPPT PTMQSSQLLS GKNLQSELEL AKVSAADDDG TPEFMKYADE 1200 TRDSSPSRSA VTKSGSPKQK RVTPPRKGRN KERDGSSPGD GGNNSLASPP GSRNARKFIL 1260 QGLPTFHNG*

Sequence ? help Back to Top

Protein Sequence Length: 1270 aa Download sequence Send to blast

MMTRGSKMAA EKVDRGSDSG PEMGSPARRE PIPPVTNMQD SPLFKYLCEL SPIQPAKSVH  60
HAQTYNEMTF PQEHRIFASP RSARRSSTSS LKRFVAAESL SAQAPAEGRE TFGWHQTPTF  120
SRSTLSDNGP SPSPLNRRSD DNQVTPCSRR QTEEVHKSQP ESVRTEGLGT DVYVAENLGG  180
QRISGNPAHS NRGSTSGVMA RIAGTTASFQ SQYNDHQQLD LAVSAAMPSE MVRCINGKGD  240
LLDGAGSQHN FAIDRSQSAS SLMPHAIDCI LSSQESKCPE QNDHRRVSMA SSSHVEGNGL  300
NFSPDAKGSP ELDRETTAMA YFLAGNQDLG QDNVEEWSED SSEVVVPRLP VRPTPGYSEK  360
PSDMINERAV KQEKQMLDAI TPQSGLITST EDGHDTGLIS TTDNASNQQS VLSHKVDNAG  420
QRGFRRRCLD FDASVARRKS LGSMGGRKSL GSRLKDCSGS SIADDNSLSS GFAKVATSDA  480
TTRLLSSGND FSNSKDSTTV ERDSGTDSRG IPARADTFEA TAMVPLPSCS FQKSMDVLNV  540
KAGEAQNRKS QNPGATHGGN VSEGLRRSPR NRSSGIGLHL NSLTSTVSFK RDFSSAGGES  600
SKGVLATVLG LQFQASSSPR EDSCVEGPGS TGLAANINQN LNPGVDKHAA ENSIQGLTNK  660
PDYHTQVPSL LERRTLTELN GADTALPLIS IKKVNVPAPD FSALNIENLP PLEESFSLTP  720
GTNLPRLVSP RGLKRSPPHQ QELIPRPDGE AVEELLGSPQ SSKRRRLSRR KFTESSQSEK  780
SGGGCKRCNC KKSKCLKLYC ECFALGVYCV GSCACRDCFN KPEYIETVIN TRQQIESRNP  840
LAFAPKIVQG AEPSPVPGDE ALDTPASARH KRGCNCKKSL CLKKYCECYQ AGVGCSEGCR  900
CEGCMNKYGK KEGPEGDEKG GEQALSTRED SQVEDPIEFL NRMSGKSDRL CDSSSNQNLS  960
PITPTFEYDS LGRPIHRLRT SLRKRADSSD KPCRSLLSQP VSRPPNSPTR FSHALDTFHL  1020
VPPYQGHSDT EFSMSGAGDS PITTPTFARM GHLSPSWEGL GDLCTLTPMQ TLAPLRLTPG  1080
SSCVTTERPG ASPAFRSHMT ESPYQAASST NVHQRHTSSR HWSPHSPRFR HPAPRSPLRF  1140
DTPRQSQLSC IDQTHSAPPT PTMQSSQLLS GKNLQSELEL AKVSAADDDG TPEFMKYADE  1200
TRDSSPSRSA VTKSGSPKQK RVTPPRKGRN KERDGSSPGD GGNNSLASPP GSRNARKFIL  1260
QGLPTFHNG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	3e-16	788	906	14	120	Protein lin-54 homolog
5fd3_B	3e-16	788	906	14	120	Protein lin-54 homolog
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	762	766	KRRRL

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00624	PBM	Transfer from PK22848.1	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024396787.1	0.0	uncharacterized protein LOC112292482 isoform X1
TrEMBL	A0A2K1JC99	0.0	A0A2K1JC99_PHYPA; Uncharacterized protein
STRING	PP1S291_71V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP993	17	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	9e-59	Tesmin/TSO1-like CXC domain-containing protein

Link Out ? help Back to Top
Phytozome	Pp3c15_6750V3.1.p