PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c15_5200V3.3.p | ||||||||
Common Name | HAP3A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | NF-YB | ||||||||
Protein Properties | Length: 219aa MW: 23810.7 Da PI: 6.396 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 188.1 | 6.2e-59 | 33 | 129 | 1 | 97 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 vreqdrflPianvsrimkk+lP+nakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfedyveplkvyl+kyre Pp3c15_5200V3.3.p 33 VREQDRFLPIANVSRIMKKALPSNAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMSTLGFEDYVEPLKVYLHKYRE 124 69****************************************************************************************** PP NF-YB 93 legek 97 legek Pp3c15_5200V3.3.p 125 LEGEK 129 ***97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 9.1E-57 | 29 | 145 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 3.11E-42 | 36 | 145 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.1E-28 | 39 | 103 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.5E-21 | 67 | 85 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 70 | 86 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 1.5E-21 | 86 | 104 | No hit | No description |
PRINTS | PR00615 | 1.5E-21 | 105 | 123 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MADSYGHNAG SPESSPHSDN ESGGHYRDQD ASVREQDRFL PIANVSRIMK KALPSNAKIS 60 KDAKETVQEC VSEFISFITG EASDKCQREK RKTINGDDLL WAMSTLGFED YVEPLKVYLH 120 KYRELEGEKA SMAKGGDQQG GKESNQGGMG SMGMAGGING MNGTMNGNMH GHGIPVSMQM 180 MQQPYAQQAP PGMIYSPHQM MPQYQMPMQS GGNQPRGV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 2e-50 | 32 | 124 | 5 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024396797.1 | 1e-162 | nuclear transcription factor Y subunit B-3-like | ||||
Refseq | XP_024396798.1 | 1e-162 | nuclear transcription factor Y subunit B-3-like | ||||
Swissprot | O23310 | 1e-71 | NFYB3_ARATH; Nuclear transcription factor Y subunit B-3 | ||||
TrEMBL | A0A0I9RJ58 | 1e-161 | A0A0I9RJ58_PHYPA; CCAAT-box binding factor HAP3-like protein | ||||
STRING | PP1S83_179V6.2 | 1e-162 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 3e-73 | nuclear factor Y, subunit B3 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c15_5200V3.3.p |
Publications ? help Back to Top | |||
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