![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pp3c15_4950V3.3.p | ||||||||
Common Name | PHYPADRAFT_130648 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 304aa MW: 33487.8 Da PI: 8.3365 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.4 | 2.8e-06 | 276 | 298 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+Cg+ F+++ +L++H + H Pp3c15_4950V3.3.p 276 ECPKCGRKFRDPIQLVNHVERdH 298 6*****************99888 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118310 | 9.94E-11 | 5 | 56 | No hit | No description |
PROSITE profile | PS51039 | 7.52 | 10 | 59 | IPR000058 | Zinc finger, AN1-type |
Gene3D | G3DSA:4.10.1110.10 | 4.2E-9 | 11 | 52 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00154 | 0.0039 | 13 | 52 | IPR000058 | Zinc finger, AN1-type |
Pfam | PF01428 | 8.7E-13 | 13 | 51 | IPR000058 | Zinc finger, AN1-type |
SuperFamily | SSF118310 | 2.35E-9 | 56 | 144 | No hit | No description |
Gene3D | G3DSA:4.10.1110.10 | 4.9E-9 | 85 | 146 | IPR000058 | Zinc finger, AN1-type |
PROSITE profile | PS51039 | 7.936 | 98 | 144 | IPR000058 | Zinc finger, AN1-type |
Pfam | PF01428 | 7.8E-8 | 101 | 139 | IPR000058 | Zinc finger, AN1-type |
SuperFamily | SSF57667 | 2.36E-6 | 243 | 294 | No hit | No description |
PROSITE profile | PS50157 | 8.6 | 243 | 271 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.083 | 243 | 266 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 245 | 266 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.827 | 275 | 303 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 3.3 | 275 | 298 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 277 | 298 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 304 aa Download sequence Send to blast |
MGTPALPDLG QHCSRVDCHQ LDFLPFTCDA CHKVFCLEHR QYKSHNCPNT KDHDVTVIVC 60 PVCHKSIRTV ANEDENVTWD RHVRTNCDPS NYEKATKKPR CPVRGCKEIL VFSNKVLCND 120 CKREVCLKHR FGLDHGCEDF RKANRSNWGI SDYGNMFMKS FKERKAPVVQ SNGNSKLPAN 180 GASSVQSGSI KGAFSGLFSS VEAGINKLGL ATSSSGTSHG NAVGRQTPSE PLKGSSGQAS 240 KTEECPQCRA RFANVAQLIK HVETMHDTPN QEMLDECPKC GRKFRDPIQL VNHVERDHGG 300 SSS* |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00306 | DAP | Transfer from AT2G41835 | Download |
![]() |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024395989.1 | 0.0 | zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like | ||||
TrEMBL | A9SIV5 | 0.0 | A9SIV5_PHYPA; Predicted protein | ||||
STRING | PP1S83_148V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G41835.1 | 6e-82 | C2H2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pp3c15_4950V3.3.p |
Entrez Gene | 5929439 |
Publications ? help Back to Top | |||
---|---|---|---|
|