PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c15_4950V3.2.p
Common NamePHYPADRAFT_130648
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 304aa    MW: 33487.8 Da    PI: 8.3365
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c15_4950V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.42.8e-06276298223
                        EETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                        +Cp+Cg+ F+++ +L++H  + H
  Pp3c15_4950V3.2.p 276 ECPKCGRKFRDPIQLVNHVERdH 298
                        6*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183109.94E-11556No hitNo description
PROSITE profilePS510397.521059IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.104.2E-91152IPR000058Zinc finger, AN1-type
SMARTSM001540.00391352IPR000058Zinc finger, AN1-type
PfamPF014288.7E-131351IPR000058Zinc finger, AN1-type
SuperFamilySSF1183102.35E-956144No hitNo description
Gene3DG3DSA:4.10.1110.104.9E-985146IPR000058Zinc finger, AN1-type
PROSITE profilePS510397.93698144IPR000058Zinc finger, AN1-type
PfamPF014287.8E-8101139IPR000058Zinc finger, AN1-type
SuperFamilySSF576672.36E-6243294No hitNo description
PROSITE profilePS501578.6243271IPR007087Zinc finger, C2H2
SMARTSM003550.083243266IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280245266IPR007087Zinc finger, C2H2
PROSITE profilePS501579.827275303IPR007087Zinc finger, C2H2
SMARTSM003553.3275298IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280277298IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MGTPALPDLG QHCSRVDCHQ LDFLPFTCDA CHKVFCLEHR QYKSHNCPNT KDHDVTVIVC  60
PVCHKSIRTV ANEDENVTWD RHVRTNCDPS NYEKATKKPR CPVRGCKEIL VFSNKVLCND  120
CKREVCLKHR FGLDHGCEDF RKANRSNWGI SDYGNMFMKS FKERKAPVVQ SNGNSKLPAN  180
GASSVQSGSI KGAFSGLFSS VEAGINKLGL ATSSSGTSHG NAVGRQTPSE PLKGSSGQAS  240
KTEECPQCRA RFANVAQLIK HVETMHDTPN QEMLDECPKC GRKFRDPIQL VNHVERDHGG  300
SSS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024395989.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like
TrEMBLA9SIV50.0A9SIV5_PHYPA; Predicted protein
STRINGPP1S83_148V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.16e-82C2H2 family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]