PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c15_4770V3.5.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 450aa    MW: 48523.2 Da    PI: 6.681
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c15_4770V3.5.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.63.4e-11373418655
                        HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +++Er RR +i +++ +L++l+P+     +k  + +++L ++veY+ksLq
  Pp3c15_4770V3.5.p 373 SIAERVRRTKISERMKRLQDLVPNM----DKQTNTSDMLDETVEYVKSLQ 418
                        689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.589367417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-15370432IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.22E-12371422No hitNo description
Gene3DG3DSA:4.10.280.101.1E-16372437IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-13373423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-8373418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MGAVDEEISA MLQSGHHSCI GQGSLAGVMA PAVTAGLDHF PYNLYNQGGY VGNHSRPVSQ  60
MQRSTSMPGG GLRDGPTHVG SPPQHRGSPP QSRPAFNMED KYVLESRSEV LDASILRNGS  120
NYGVVYENSV PSSMTLSMPV LHHYHSAPAN SVLADTNEEQ IGNTVMSSMF TGDGLNSITE  180
NMDVERMGSG NSNPNEFEHY LAPENDFSGQ AAFPSLRKEV GTPDSFGSTS KSSKNGLFSQ  240
TSLPSAGLSQ LNSAVQDRMA ENGSGKSSSR DSDDNNHLIN GYTALIYTQE DFTWKSPTSP  300
AKRQRGLDGD SETSSGSAEG STYRNCQHSG LVRHMSLPST NGGPNSPGLE DNHYGAVPMR  360
TRAKRGCATH PRSIAERVRR TKISERMKRL QDLVPNMDKQ TNTSDMLDET VEYVKSLQRK  420
VQELSDTVAR LKADASQRAK NSNNNNSSN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.40370.0protonema
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024396897.10.0transcription factor bHLH130-like isoform X2
RefseqXP_024396898.10.0transcription factor bHLH130-like isoform X2
RefseqXP_024396899.10.0transcription factor bHLH130-like isoform X2
RefseqXP_024396900.10.0transcription factor bHLH130-like isoform X2
TrEMBLA0A2K1JBY90.0A0A2K1JBY9_PHYPA; Uncharacterized protein
STRINGPP1S83_128V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.11e-34bHLH family protein