PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c15_4400V3.1.p
Common NamePHYPADRAFT_79984
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family AP2
Protein Properties Length: 958aa    MW: 105793 Da    PI: 8.9553
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c15_4400V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.91.6e-15364413155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV+++ ++g+W+A+I++      +++++lg  +t eeAa+a+++a+  l g
  Pp3c15_4400V3.1.p 364 SKYRGVTFYTRTGKWEAHIWHE-----SAQVYLGASDTTEEAARAYDKAAILLIG 413
                        89*******************6.....6*********************987766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.8E-9364410IPR001471AP2/ERF domain
CDDcd000189.46E-19364420No hitNo description
SuperFamilySSF541713.07E-14364421IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.0E-15365421IPR001471AP2/ERF domain
SMARTSM003808.8E-24365427IPR001471AP2/ERF domain
PROSITE profilePS5103215.857365421IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0030003anatomyprotonema
Sequence ? help Back to Top
Protein Sequence    Length: 958 aa     Download sequence    Send to blast
MAPRKLFDLN KLPALDEEME EVVAVEGHLT GHRRLEWTTE RRSQRSSTVD TNVSLLLQNG  60
AANGISWQAL GGVMNQGAKI ANAKPNGWTS LLAPHSQAAG CLTTERSSME SCFVTSNTTE  120
GVAIFNMRPF FEKQAKRLLE MWSISELELR LPENEMSCQS TTDINVGNNI KYHIEVSDEQ  180
SEGRGPNMYD FEHSETMMRQ RIKPKAVIEP TIEEAANNTS QLRKSLTRID SGTLKLTGAS  240
QEGATLGNQT KSKHNLRPAD QEPVVNSTEH QEELLREKNI KALAFDATFD FNTERCTPTS  300
PCKRCLEFCE TPFPAALAPG CPIGDDPVFA SGNDEDVPPI LKNRNEEEVA LRKQSRHGPK  360
SKSSKYRGVT FYTRTGKWEA HIWHESAQVY LGASDTTEEA ARAYDKAAIL LIGPDADINF  420
KPEDYPMEMR HLYKLNKEQL VIYLRRDSRG YGAQASFPGV KHIKKNTYQA ACGDTILGTT  480
YPTEEDAARA VYKEAVRCSY GGMASWIINT HHVRNIPSYA WQRLAALDPE EVTKLTAGTN  540
IGSCSALRKK CSLKRRNLSS QKKNKKKRSS RSKKKQSFTS PKNTTIFATS DTTKSVPAGQ  600
DEDAVPKTCH ENSRAWGAQP ASCRSPDRHC ACTSSGEDIT LANGACSSGA RSQQTTRPMH  660
LQPHVAGRGT SHAEMLCLAT GSAFSSRRRV FEKISSDSER VAIQSNDFPS SFGRSALSSS  720
DQRFTSETGF VSAHVKKSSI MNPSVNIPTD STKFKLFNVE INVSEEMAHA GRGGHPQAQT  780
SNEVGFQSHD CTTHSGDTQD LLHLPRKRTK ITKSVDTNDP WESGLQTVTR SEYCSPFEAV  840
AAISRRHEVT PLNCRPWLQP DTSLAPLRPQ GRQSWTMLET SPLPPPSSPS TVTSVNALHR  900
SGSLSLVQPA GSTHLVLRRV SEMSRRLKLP AHLRIVRLTS PAPMHHKSSR TDTGSRI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1553567KRRNLSSQKKNKKKR
2554567RRNLSSQKKNKKKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00616PBMTransfer from AT5G60120Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024396456.10.0uncharacterized protein LOC112292339
TrEMBLA0A2K1JBX40.0A0A2K1JBX4_PHYPA; Uncharacterized protein
STRINGPP1S83_93V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4971784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G39250.16e-25AP2 family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]