PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c15_3620V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 191aa MW: 21180.6 Da PI: 4.2251 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.9 | 6.1e-19 | 7 | 61 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GVr ++ +g+Wv+eIr+p g ++ r++lg+f +aeeAa a++aa ++l+g Pp3c15_3620V3.2.p 7 SSYRGVRMRR-WGKWVSEIREPQRSGsRTNRIWLGSFRSAEEAAHAYDAALLCLRG 61 67*****998.**********97788788*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 6.02E-20 | 7 | 69 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.52E-25 | 7 | 70 | No hit | No description |
Pfam | PF00847 | 7.9E-12 | 7 | 61 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.431 | 8 | 69 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-32 | 8 | 75 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-29 | 8 | 70 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-9 | 9 | 20 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-9 | 35 | 51 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MSNNAGSSYR GVRMRRWGKW VSEIREPQRS GSRTNRIWLG SFRSAEEAAH AYDAALLCLR 60 GSTANLNFPN FNYRLPAGTP GRYTTREIQA AAAAAAAQSA GRPFSYNNFM SPDSSSDSED 120 EVEDITYNES TSNTNDGTPS QPAYNDGWRS FDDNPYNQVD EMARGLMIRP PNNDSDDSDD 180 DNDDEDPPLW * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-16 | 6 | 69 | 3 | 63 | ATERF1 |
3gcc_A | 1e-16 | 6 | 69 | 3 | 63 | ATERF1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024397267.1 | 1e-137 | ethylene-responsive transcription factor ERF039-like | ||||
Refseq | XP_024397268.1 | 1e-137 | ethylene-responsive transcription factor ERF039-like | ||||
TrEMBL | A0A2K1JBR2 | 1e-135 | A0A2K1JBR2_PHYPA; Uncharacterized protein | ||||
STRING | PP1S83_10V6.1 | 1e-135 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35700.1 | 4e-19 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c15_3620V3.2.p |