PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c15_3180V3.1.p

Common Name

PHYPADRAFT_166789

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Dof

Protein Properties

Length: 404aa MW: 44421 Da PI: 6.5064

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c15_3180V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	116.8	8.8e-37	65	122	3	60
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 k l+cprC+s+ntkfCyynnys++qPr+fC++C+ryWt GG+lrnvPvGgg+r +++ Pp3c15_3180V3.1.p 65 PKDLPCPRCQSMNTKFCYYNNYSVNQPRHFCRNCQRYWTVGGTLRNVPVGGGSRVKHS 122 67899*************************************************8876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-22	66	118	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.3E-31	67	121	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.876	68	122	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	70	106	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence Send to blast
MHLPLQHQAR LAGSFDDENE ELHAQLQANS VSHSHSHHSQ EDDVSQSQGS KGSGGDTTPN 60 GTTKPKDLPC PRCQSMNTKF CYYNNYSVNQ PRHFCRNCQR YWTVGGTLRN VPVGGGSRVK 120 HSRPRNRTDP YYRPGANPSN ESDAETDQSG ISLHPYLAHA MAGMVPPDMA GLLPDAGFPD 180 YPDPAEFPFH PSQISNLLQL ALLQNPSMYG MPFPVGNPER DEAETLQAMY EAQAAPNSGN 240 LLAVAAAMML MPDLDPSTMS LLHKATLWAE AQRAQAMSRR QTTQHAAQAA SAWAEERECK 300 PSVSAQMHRE IVAREELRHR QQVAGMHRRP GFWETALWYS RPNKRPAWDE ASPSPKPAQQ 360 GSTRTLDEEA GNTANASSFS HGYDDTSSWG SVGLNAGQDL FFS*

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence Send to blast

MHLPLQHQAR LAGSFDDENE ELHAQLQANS VSHSHSHHSQ EDDVSQSQGS KGSGGDTTPN  60
GTTKPKDLPC PRCQSMNTKF CYYNNYSVNQ PRHFCRNCQR YWTVGGTLRN VPVGGGSRVK  120
HSRPRNRTDP YYRPGANPSN ESDAETDQSG ISLHPYLAHA MAGMVPPDMA GLLPDAGFPD  180
YPDPAEFPFH PSQISNLLQL ALLQNPSMYG MPFPVGNPER DEAETLQAMY EAQAAPNSGN  240
LLAVAAAMML MPDLDPSTMS LLHKATLWAE AQRAQAMSRR QTTQHAAQAA SAWAEERECK  300
PSVSAQMHRE IVAREELRHR QQVAGMHRRP GFWETALWYS RPNKRPAWDE ASPSPKPAQQ  360
GSTRTLDEEA GNTANASSFS HGYDDTSSWG SVGLNAGQDL FFS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.3843	0.0	gametophore\| protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024396700.1	0.0	uncharacterized protein LOC112292442
TrEMBL	A9SVJ3	0.0	A9SVJ3_PHYPA; Predicted protein
STRING	PP1S124_139V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	6e-29	cycling DOF factor 3

Link Out ? help Back to Top
Phytozome	Pp3c15_3180V3.1.p
Entrez Gene	5933593

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]