PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c15_24050V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 432aa    MW: 46296.6 Da    PI: 8.4327
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c15_24050V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.14.7e-06133157226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         kt++C  f+ t  C+yG+ C+F H+
  Pp3c15_24050V3.1.p 133 KTKPCTKFFSTSGCPYGEGCHFLHC 157
                         9***********************8 PP
2zf-CCCH29.41.4e-09215241127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ykt+lC+ f+    C++Gd+C+FaHg+
  Pp3c15_24050V3.1.p 215 YKTRLCNKFSTPEGCRFGDKCHFAHGE 241
                         9************************96 PP
3zf-CCCH32.41.6e-10397421126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +kt+lC +f++ GtC + drC+FaHg
  Pp3c15_24050V3.1.p 397 FKTKLCENFSQ-GTCTFADRCHFAHG 421
                         69*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.992117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.37595118IPR000571Zinc finger, CCCH-type
PfamPF146080.1295116No hitNo description
Gene3DG3DSA:4.10.1000.101.8E-696122IPR000571Zinc finger, CCCH-type
SMARTSM003560.24131158IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-6131157IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.915131159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-7132156IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-4133157IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-4214241IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.727214242IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-6215241IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-8215245IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-15215246IPR000571Zinc finger, CCCH-type
SMARTSM003222.9E-12310380IPR004087K Homology domain
PROSITE profilePS5008415.032311375IPR004088K Homology domain, type 1
SuperFamilySSF547913.36E-13314385IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.3E-14314380IPR004088K Homology domain, type 1
CDDcd001052.25E-14314375No hitNo description
PfamPF000132.6E-11315376IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.4E-15393427IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-8395427IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-6396422IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.61396423IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-7397421IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MKETQQPVLT LFQASYEQNP KLLCIKYQEL ARELIRKLEL AKIQTTRKGD MGSAAYEPAL  60
KKARIFSVTP LSVDENGFGN SSGVSGQDQV NGDLDCRRFG TPEGCPYGTK CRFKHGPADE  120
RQIEQPVSAL GSKTKPCTKF FSTSGCPYGE GCHFLHCVPG GIAALGLMPL GVAVGTPTAL  180
TPTSGMRTVM GGFGPNSSTP LPGGSPDPSV TVGGYKTRLC NKFSTPEGCR FGDKCHFAHG  240
ESDLRPSNVR SNGVDHLGNC SYQNWLSYMQ EAAYANGGTH LLPPVATAIY YGEPTPPGVM  300
PATAAGFGLN SGNLKMSIEA VLAGAIIGKA GANVKQISRL TGCKLTIRDH ESNASMRNVE  360
MEGTYEQIER ASEMVRQFLS HKEVVPQRVA AIASHNFKTK LCENFSQGTC TFADRCHFAH  420
GTSELRPLTR S*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024396650.10.0zinc finger CCCH domain-containing protein 14-like isoform X3
TrEMBLA0A2K1JEE50.0A0A2K1JEE5_PHYPA; Uncharacterized protein
STRINGPP1S66_196V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-38C3H family protein