PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c15_22780V3.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | LBD | ||||||||
Protein Properties | Length: 172aa MW: 19054.6 Da PI: 7.0826 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 142.1 | 1.8e-44 | 8 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrr+C++dCv+apyfp ++p+kfanvhk+FGa+nv k+l++lp e r da+ss+vyeA+ar+rdPvyG+vg i++lqqq+++l+ Pp3c15_22780V3.5.p 8 PCAACKLLRRRCTRDCVFAPYFPPDEPQKFANVHKVFGAANVNKMLQELPVEARGDAVSSMVYEADARVRDPVYGCVGAISSLQQQVAHLQ 98 7****************************************************************************************** PP DUF260 92 aelallkee 100 ++la++++e Pp3c15_22780V3.5.p 99 TQLAVANAE 107 ****99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.869 | 7 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.5E-44 | 8 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MAGSGMSPCA ACKLLRRRCT RDCVFAPYFP PDEPQKFANV HKVFGAANVN KMLQELPVEA 60 RGDAVSSMVY EADARVRDPV YGCVGAISSL QQQVAHLQTQ LAVANAEIVC MRMHNTESSR 120 DSDNSRHIQG SYQQGLSPPL QPQSPELQNY YKPTAHYHRT DNMELAELLW T* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-48 | 3 | 109 | 7 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-48 | 3 | 109 | 7 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed predominantly in roots, and at low levels in shoots, floral stems and open flowers. {ECO:0000269|PubMed:12068116}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024397549.1 | 1e-127 | LOB domain-containing protein 4-like | ||||
Refseq | XP_024397551.1 | 1e-127 | LOB domain-containing protein 4-like | ||||
Refseq | XP_024397552.1 | 1e-127 | LOB domain-containing protein 4-like | ||||
Refseq | XP_024397553.1 | 1e-127 | LOB domain-containing protein 4-like | ||||
Refseq | XP_024397554.1 | 1e-127 | LOB domain-containing protein 4-like | ||||
Swissprot | Q8LBW3 | 7e-61 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A2K1JE80 | 1e-126 | A0A2K1JE80_PHYPA; Uncharacterized protein | ||||
STRING | PP1S66_56V6.1 | 1e-127 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 2e-63 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c15_22780V3.5.p |
Publications ? help Back to Top | |||
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