![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pp3c15_21350V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 93aa MW: 10442.1 Da PI: 10.924 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 39.5 | 1.7e-12 | 29 | 90 | 1 | 57 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeereda 57 +C++ +vlr++C++ C+l+p++ ++q +++ +v+k FG++ ++ +++a++e++r+ + Pp3c15_21350V3.1.p 29 SCNGYRVLRKSCSNTCILRPCLewiesSDAQGHATIFVAKYFGRAGLMGIISAVHETQRPVT 90 6*********************9998666778**************************9865 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 11.912 | 28 | 92 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.7E-9 | 29 | 89 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 93 aa Download sequence Send to blast |
MDRSRLKGSK RSNERRKKIL DRAWNSKMSC NGYRVLRKSC SNTCILRPCL EWIESSDAQG 60 HATIFVAKYF GRAGLMGIIS AVHETQRPVT AP* |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002525255.1 | 4e-30 | LOB domain-containing protein 37 | ||||
Swissprot | Q9FN11 | 4e-29 | LBD37_ARATH; LOB domain-containing protein 37 | ||||
Swissprot | Q9SZE8 | 3e-29 | LBD39_ARATH; LOB domain-containing protein 39 | ||||
TrEMBL | A0A2K1JDZ6 | 1e-62 | A0A2K1JDZ6_PHYPA; Uncharacterized protein | ||||
STRING | PP1S454_4V6.1 | 2e-63 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP403 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37540.1 | 1e-31 | LOB domain-containing protein 39 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pp3c15_21350V3.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|