PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c15_1800V3.1.p
Common NamePHYPADRAFT_166771
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 412aa    MW: 45022.4 Da    PI: 5.1108
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c15_1800V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.12e-10184226855
                        HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         Er+RR+++N+++  Lr+l+Pk +      K++Ka+i    + Y+++Lq
  Pp3c15_1800V3.1.p 184 SERKRRKKLNDGLYSLRSLVPKiS------KMDKASIIGDSIVYVQELQ 226
                        6*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.361176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-15179241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-14182231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-16183245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.13E-11183230No hitNo description
PfamPF000105.2E-8184226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2607.1E-4329404No hitNo description
PROSITE profilePS516718.627332407IPR002912ACT domain
CDDcd048730.00306342396No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MDETKRNCNW NATKESLDQI DSLLNEIGLA PTKESQDLEF QAWLQNCQHS LDPSELTPNQ  60
SLDFPTARKY LDANATKAVI QESQYFARFA EGHKFSHELD SASSSLAQWI YNSGVKQRLP  120
PSSSDPSSAS ASHSEVKTTT GSEMGLLRWT GSLSSEDFVE PEAAQGRGKH QMKSVGLASK  180
NLVSERKRRK KLNDGLYSLR SLVPKISKMD KASIIGDSIV YVQELQQQIQ TIEKEIAEIE  240
EKVSSANCVA EEDSGGSGGS GSTESKEHAA GRGTSLEQVV EVVKPVIELN NTVMAASSSL  300
VDPQDPSPGH SPTVEIQILN MEVAKLEEQT YQLKTTCQKG LGILVQLTRA LESLDVDILT  360
AHHIAFQDNM HDTFIVETRD CSTKKAEHVR KALMDAVAQH GLTVLASKLL D*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184191ERKRRKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.102420.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024397074.10.0transcription factor SCREAM2-like
RefseqXP_024397075.10.0transcription factor SCREAM2-like
RefseqXP_024397076.10.0transcription factor SCREAM2-like
RefseqXP_024397077.10.0transcription factor SCREAM2-like
RefseqXP_024397078.10.0transcription factor SCREAM2-like
RefseqXP_024397080.10.0transcription factor SCREAM2-like
RefseqXP_024397081.10.0transcription factor SCREAM2-like
RefseqXP_024397082.10.0transcription factor SCREAM2-like
TrEMBLA9SVD40.0A9SVD4_PHYPA; Predicted protein
STRINGPP1S124_23V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5571678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.19e-22bHLH family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]