PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c15_1680V3.7.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

bHLH

Protein Properties

Length: 467aa MW: 51415.8 Da PI: 8.763

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c15_1680V3.7.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.5	2.8e-09	259	303	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h +rEr+RRd++ ++f L +llP+ +K + ++++ veY+k+L Pp3c15_1680V3.7.p 259 HIIRERQRRDDMTNKFLILESLLPPG-----PKRDRSTVVDDSVEYVKNL 303 999*******************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.633	254	303	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.83E-12	256	325	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-10	259	316	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.7E-6	259	303	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.30E-8	259	308	No hit	No description
SMART	SM00353	7.4E-8	260	309	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence Send to blast
MPGMYTTGME KTHHGNGVND NASPSGYSLD YASFLDGADS ALQQQLYQYL QGPSVHRENH 60 PGQVEEVDGF TNGTPLYQTG AASFEAGPSH FQSMPVEPLQ ARTDVVQQSI LDGSLCHSGH 120 NGGRISEYAT NSDAGRSIRK HIKAIGTSTP GCLQQLSPLG TFLPHRHLYS TNHQPGSNFE 180 CGVSQAPGRP KLVDASGSPS VYIPRERSGY ETSCSPNSLK RTRSELVIPQ SRTFRGPNSQ 240 VVDSGPKTSF RRPNDQAGHI IRERQRRDDM TNKFLILESL LPPGPKRDRS TVVDDSVEYV 300 KNLHQRLKDT QKRRADILKA HAALSSEVLT VHTPKQNNRA TCHNLSSPDL RKVAVNAAFI 360 RTSPESKEID SDAKKKASCI DNIQVHVDLP HQIVIEMTCR SHPHIQSQIM KELERLAMDI 420 SRCSMAKHQD RLVCVIIMKP RIVSKSPTTS DDITEALKRA LVPEAS*

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence Send to blast

MPGMYTTGME KTHHGNGVND NASPSGYSLD YASFLDGADS ALQQQLYQYL QGPSVHRENH  60
PGQVEEVDGF TNGTPLYQTG AASFEAGPSH FQSMPVEPLQ ARTDVVQQSI LDGSLCHSGH  120
NGGRISEYAT NSDAGRSIRK HIKAIGTSTP GCLQQLSPLG TFLPHRHLYS TNHQPGSNFE  180
CGVSQAPGRP KLVDASGSPS VYIPRERSGY ETSCSPNSLK RTRSELVIPQ SRTFRGPNSQ  240
VVDSGPKTSF RRPNDQAGHI IRERQRRDDM TNKFLILESL LPPGPKRDRS TVVDDSVEYV  300
KNLHQRLKDT QKRRADILKA HAALSSEVLT VHTPKQNNRA TCHNLSSPDL RKVAVNAAFI  360
RTSPESKEID SDAKKKASCI DNIQVHVDLP HQIVIEMTCR SHPHIQSQIM KELERLAMDI  420
SRCSMAKHQD RLVCVIIMKP RIVSKSPTTS DDITEALKRA LVPEAS*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024397681.1	0.0	uncharacterized protein LOC112292923
Refseq	XP_024397682.1	0.0	uncharacterized protein LOC112292923
Refseq	XP_024397683.1	0.0	uncharacterized protein LOC112292923
Refseq	XP_024397684.1	0.0	uncharacterized protein LOC112292923
Refseq	XP_024397685.1	0.0	uncharacterized protein LOC112292923
Refseq	XP_024397686.1	0.0	uncharacterized protein LOC112292923
Refseq	XP_024397687.1	0.0	uncharacterized protein LOC112292923
TrEMBL	A0A2K1JBI9	0.0	A0A2K1JBI9_PHYPA; Uncharacterized protein
STRING	PP1S124_18V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63650.3	2e-11	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pp3c15_1680V3.7.p