PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c15_15020V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family B3
Protein Properties Length: 500aa    MW: 54812.6 Da    PI: 8.6669
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c15_15020V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.69.2e-13316408393
                         EE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   3 kvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         k+lt  dv+++gr+vlpk+ a e+    ++ +e+k lt+ed  s ++W++++++  ++ks++y+l+ ++  Fvk  +L+e+D ++ +  ++
  Pp3c15_15020V3.3.p 316 KELTVTDVGELGRIVLPKRDA-EYqlpRLEAKEGKLLTMEDyNSINKWTLRYKWwpNNKSRMYILE-NTAYFVKYYNLREKDEIIVY--KD 402
                         788999***************.6669977777999******5555*********877888888888.**************998888..44 PP

                         SEE..E CS
                  B3  88 sefelv 93 
                          +++lv
  Pp3c15_15020V3.3.p 403 AQEKLV 408
                         455445 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.8E-19311417IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-14313403IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.9E-4314415IPR003340B3 DNA binding domain
PfamPF023628.2E-9316408IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MDVVGGVIVA GHSSKMGSSG VSRGNLSGTK RSFWGGDNYN EDFTSSLMKQ GEPPQRSLRS  60
GSEFHSGRWG LNTTMRSCTQ RSEMEAKGGM GSEADLWSVL NCATLKSGIF IVSGDGLTRA  120
RHEGIPEGRK GSVEVKIDSL TTETISCEQG SINSALSANE EGFSFWASAP HTYRSYLLKP  180
LDPFVNITTV AADLSCGGVH CSNSLEANKD IQKALMFGDS SLFLNPPIIA TVHNEGEPLQ  240
KCATVISSQT QSQNAGKQDV GTSSGNTFAS LSSVFMDGIS PTSTRELVAP FFRDNISAFS  300
KPVWSWVDPL RFLLRKELTV TDVGELGRIV LPKRDAEYQL PRLEAKEGKL LTMEDYNSIN  360
KWTLRYKWWP NNKSRMYILE NTAYFVKYYN LREKDEIIVY KDAQEKLVIR GKKGPSSASP  420
GTYPSLRHSG FTGMNLEKRA SKCIYGRSNI HKSNPTASSS YSYALPVWSN NTNASLNSFE  480
KPSPHGLAMD FSTGEFKCS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A2e-273104141106B3 domain-containing transcription factor FUS3
6j9b_D2e-273104141106B3 domain-containing transcription factor FUS3
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.71240.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024396655.10.0uncharacterized protein LOC112292422 isoform X1
RefseqXP_024396656.10.0uncharacterized protein LOC112292422 isoform X1
RefseqXP_024396657.10.0uncharacterized protein LOC112292422 isoform X1
TrEMBLA0A2K1JD980.0A0A2K1JD98_PHYPA; Uncharacterized protein
STRINGPP1S104_58V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.14e-32B3 family protein