PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c15_15020V3.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | B3 | ||||||||
Protein Properties | Length: 500aa MW: 54812.6 Da PI: 8.6669 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 39.6 | 9.2e-13 | 316 | 408 | 3 | 93 |
EE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 3 kvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 k+lt dv+++gr+vlpk+ a e+ ++ +e+k lt+ed s ++W++++++ ++ks++y+l+ ++ Fvk +L+e+D ++ + ++ Pp3c15_15020V3.3.p 316 KELTVTDVGELGRIVLPKRDA-EYqlpRLEAKEGKLLTMEDyNSINKWTLRYKWwpNNKSRMYILE-NTAYFVKYYNLREKDEIIVY--KD 402 788999***************.6669977777999******5555*********877888888888.**************998888..44 PP SEE..E CS B3 88 sefelv 93 +++lv Pp3c15_15020V3.3.p 403 AQEKLV 408 455445 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.8E-19 | 311 | 417 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.9E-14 | 313 | 403 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 5.9E-4 | 314 | 415 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.2E-9 | 316 | 408 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 500 aa Download sequence Send to blast |
MDVVGGVIVA GHSSKMGSSG VSRGNLSGTK RSFWGGDNYN EDFTSSLMKQ GEPPQRSLRS 60 GSEFHSGRWG LNTTMRSCTQ RSEMEAKGGM GSEADLWSVL NCATLKSGIF IVSGDGLTRA 120 RHEGIPEGRK GSVEVKIDSL TTETISCEQG SINSALSANE EGFSFWASAP HTYRSYLLKP 180 LDPFVNITTV AADLSCGGVH CSNSLEANKD IQKALMFGDS SLFLNPPIIA TVHNEGEPLQ 240 KCATVISSQT QSQNAGKQDV GTSSGNTFAS LSSVFMDGIS PTSTRELVAP FFRDNISAFS 300 KPVWSWVDPL RFLLRKELTV TDVGELGRIV LPKRDAEYQL PRLEAKEGKL LTMEDYNSIN 360 KWTLRYKWWP NNKSRMYILE NTAYFVKYYN LREKDEIIVY KDAQEKLVIR GKKGPSSASP 420 GTYPSLRHSG FTGMNLEKRA SKCIYGRSNI HKSNPTASSS YSYALPVWSN NTNASLNSFE 480 KPSPHGLAMD FSTGEFKCS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 2e-27 | 310 | 414 | 1 | 106 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 2e-27 | 310 | 414 | 1 | 106 | B3 domain-containing transcription factor FUS3 |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.7124 | 0.0 | gametophore| protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024396655.1 | 0.0 | uncharacterized protein LOC112292422 isoform X1 | ||||
Refseq | XP_024396656.1 | 0.0 | uncharacterized protein LOC112292422 isoform X1 | ||||
Refseq | XP_024396657.1 | 0.0 | uncharacterized protein LOC112292422 isoform X1 | ||||
TrEMBL | A0A2K1JD98 | 0.0 | A0A2K1JD98_PHYPA; Uncharacterized protein | ||||
STRING | PP1S104_58V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24650.1 | 4e-32 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c15_15020V3.3.p |