PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c15_12580V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 1192aa    MW: 129839 Da    PI: 4.4213
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c15_12580V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.51.1e-0811681191226
                          -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHg 26  
                          k ++Crf+a+ G+Ck+Gd C F Hg
  Pp3c15_12580V3.2.p 1168 KDVPCRFYAK-GYCKRGDACEFWHG 1191
                          6789******.***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.102.6E-11393458IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579031.2E-9408465IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500168.582411477IPR019787Zinc finger, PHD-finger
CDDcd155683.34E-20413458No hitNo description
SMARTSM002491.8E-7413459IPR001965Zinc finger, PHD-type
PROSITE patternPS013590414474IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.245.107.5E-8641689IPR003121SWIB/MDM2 domain
SuperFamilySSF475929.81E-6651689IPR003121SWIB/MDM2 domain
SuperFamilySSF552778.89E-169481011IPR003169GYF domain
PROSITE profilePS5082914.8579581012IPR003169GYF domain
CDDcd000726.16E-159581013No hitNo description
SMARTSM004446.0E-169591014IPR003169GYF domain
Gene3DG3DSA:3.30.1490.401.5E-159601012IPR003169GYF domain
PfamPF022134.1E-119611003IPR003169GYF domain
PROSITE profilePS5010315.00911661191IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-611671191IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-611681191IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-411701191IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1192 aa     Download sequence    Send to blast
MENGLQEFAE QMLATAVVGK DQDVVKVLTS VEVGDDLKDT TMTEVVEEKV GGGGGAEGGE  60
GEEEEDVYSM EVSDELEKRN EVVAKEAEST AVAVAPPELD KNDDSPKEED VTMSTINDEP  120
TSESGAATER GPAEIPFAEP AAGAAAAAAS EKEDVTDLNE TPKLELENES EEMRVNEASP  180
TPPTHDLVEA AEELEVPQES PAKSEAVKDE VVERVIRPAL DVNEPAEALK TVEGVHSDVA  240
PFRNVRAEEA KALHDAETKM VSAAACVANE AMESAHEDVR AAAQGEEEVA QVKLEPKDEG  300
QSSGQVDDIR SSQSQPNGGA DMAVDAKEGD AGVVPKAEKT ELEREMELYE ASEREEQVWL  360
LAPTRVEQQC EEPSKDVQND RKRALDMPTQ ERQRKQSRRT HAAEERKKDE EDVCFICFDG  420
GDLVMCDRRS CPKAYHLSCI GRDAAFFKKK GAWLCGWHFC SVCTKPGSFQ CYTCPTAYCG  480
SCIQEAEFLM LRKRKGLCED CLPIVSMIER NETTNADGVE VDFEDQDTYE CLFKEYWEDL  540
KRRLSLIMPE LDKDGKPVGG MGSMLNSGGS ETEDHSENEE SDRESDESEQ EHPEPVEAAR  600
KGRGKGKKDR MGSEKMEEDV DQEEGEEEGE GEGEEEEVQE QQEDRGDKFE SWASQELLGF  660
IEHMKEDPTK PLSRFAVNKL LWSYIKRHSV GVAWRCGQRC LNLMGVTLRE CVEKLQELSS  720
PAFRAAKLQA RPEVSADPHM DPGYESDVNE MSPLQVGGRM FRAKGAASSR WEKGGGSGGG  780
GGGWDGLNVE ESSFYPGRKG DADGQRSKSS WEETSRSRGY GRGGYDAGRS GEKVGAGRES  840
SYGVEAKTYG SDERDRRVWD KDWDREQTRE QERGRGDAYN WSSSGGRNGL DAWGGEVGEA  900
KYGRGETRTG TTPVFGQPRT EWGSTRREAA STASVSSTPV GFGPATPSIQ NLAALEKEKL  960
WHYQDPTGTV QGPFTMEQLR KWNTTGLFPV TLTIWKTGQS QAESMLLTDA LAGRWKEEIW  1020
GGGAGGAGRS RSRELVGGGS PTPRANSAWS VMEGGLGASR GEVGAAVSST EWESRDAAER  1080
GGSWARVASS FGGVSSGSGR AVEEWSGARA RAEPESWGGP SRKGDGSSWG GSESGKSTYG  1140
RSNSSREYEG AAGREGSRSS RGPRGSKKDV PCRFYAKGYC KRGDACEFWH G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A4e-13405479980Histone-lysine N-methyltransferase NSD3
4gnd_C4e-13405479980Histone-lysine N-methyltransferase NSD3
4gne_A4e-13405479980Histone-lysine N-methyltransferase NSD3
4gnf_A4e-13405479980Histone-lysine N-methyltransferase NSD3
4gng_A4e-13405479980Histone-lysine N-methyltransferase NSD3
4gng_D4e-13405479980Histone-lysine N-methyltransferase NSD3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024396035.10.0zinc finger CCCH domain-containing protein 19-like
TrEMBLA0A2K1JCY80.0A0A2K1JCY8_PHYPA; Uncharacterized protein
STRINGPP1S258_72V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1807911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.18e-50nucleic acid binding;zinc ion binding;DNA binding