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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c15_12420V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | LFY | ||||||||
Protein Properties | Length: 337aa MW: 37290 Da PI: 7.2041 | ||||||||
Description | LFY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FLO_LFY | 40.9 | 3.5e-13 | 139 | 251 | 49 | 163 |
FLO_LFY 49 releelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslseifrldllvGeryGikaavraerrrlee............eeaek 127 +l+ +f ++G+r tv ki+e+Gft++tL+ d el l++s+ + + l +Ge +Gik a a++ +l++ e Pp3c15_12420V3.1.p 139 IDLDTFFDGFGLRPETVFKIKEMGFTAKTLMSNVD-ELPSLLESINQHH--LLTLGEEWGIKGA--AKKWQLDQtyaphpedekwpE---- 220 4899**************************98654.7888888888754..3668********9..667777775555443333331.... PP FLO_LFY 128 krrkllsedeetaldal.sqeglseepvqeekeaags 163 sed+ + + + s+e+++ ep ++ +++++ Pp3c15_12420V3.1.p 221 ------SEDTCKEVACIdSEEVTQLEPCSKWMQQQQQ 251 ......4444443333313344444554443333332 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF01698 | 2.5E-7 | 140 | 201 | IPR002910 | Floricaula/leafy protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MVKVKGVEWN HVIVLKEPEK HGMATLVRCI HCDKEFQGNA MRIRAHLLGN KRQAGVTGCP 60 TVPDDAREEL RLIEIAREQT QRKRKPVKTR GVRGTSSPSD HSSGSADHFD GKGGSGRKGG 120 RISLQHELLA RMGIIMASID LDTFFDGFGL RPETVFKIKE MGFTAKTLMS NVDELPSLLE 180 SINQHHLLTL GEEWGIKGAA KKWQLDQTYA PHPEDEKWPE SEDTCKEVAC IDSEEVTQLE 240 PCSKWMQQQQ QGQQLPSSHN HLGPSNLTGS NLSPSNQGVS DVGPGGSPGR VGYYTNLLSY 300 QSQGNARFDI MREVDVTSQR QPQIKHSFDH VVGTTF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024396205.1 | 0.0 | uncharacterized protein LOC112292190 | ||||
TrEMBL | A0A2K1JCY1 | 0.0 | A0A2K1JCY1_PHYPA; Uncharacterized protein | ||||
STRING | PP1S258_46V6.1 | 0.0 | (Physcomitrella patens) |
Link Out ? help Back to Top | |
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Phytozome | Pp3c15_12420V3.1.p |