PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c15_12420V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

LFY

Protein Properties

Length: 337aa MW: 37290 Da PI: 7.2041

Description

LFY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c15_12420V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FLO_LFY	40.9	3.5e-13	139	251	49	163
FLO_LFY 49 releelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslseifrldllvGeryGikaavraerrrlee............eeaek 127 +l+ +f ++G+r tv ki+e+Gft++tL+ d el l++s+ + + l +Ge +Gik a a++ +l++ e Pp3c15_12420V3.1.p 139 IDLDTFFDGFGLRPETVFKIKEMGFTAKTLMSNVD-ELPSLLESINQHH--LLTLGEEWGIKGA--AKKWQLDQtyaphpedekwpE---- 220 4899************************98654.7888888888754..3668******9..667777775555443333331.... PP FLO_LFY 128 krrkllsedeetaldal.sqeglseepvqeekeaags 163 sed+ + + + s+e+++ ep ++ +++++ Pp3c15_12420V3.1.p 221 ------SEDTCKEVACIdSEEVTQLEPCSKWMQQQQQ 251 ......4444443333313344444554443333332 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF01698	2.5E-7	140	201	IPR002910	Floricaula/leafy protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MVKVKGVEWN HVIVLKEPEK HGMATLVRCI HCDKEFQGNA MRIRAHLLGN KRQAGVTGCP 60 TVPDDAREEL RLIEIAREQT QRKRKPVKTR GVRGTSSPSD HSSGSADHFD GKGGSGRKGG 120 RISLQHELLA RMGIIMASID LDTFFDGFGL RPETVFKIKE MGFTAKTLMS NVDELPSLLE 180 SINQHHLLTL GEEWGIKGAA KKWQLDQTYA PHPEDEKWPE SEDTCKEVAC IDSEEVTQLE 240 PCSKWMQQQQ QGQQLPSSHN HLGPSNLTGS NLSPSNQGVS DVGPGGSPGR VGYYTNLLSY 300 QSQGNARFDI MREVDVTSQR QPQIKHSFDH VVGTTF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024396205.1	0.0	uncharacterized protein LOC112292190
TrEMBL	A0A2K1JCY1	0.0	A0A2K1JCY1_PHYPA; Uncharacterized protein
STRING	PP1S258_46V6.1	0.0	(Physcomitrella patens)

Link Out ? help Back to Top
Phytozome	Pp3c15_12420V3.1.p