PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c15_11880V3.1.p
Common NamePHYPADRAFT_94284
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family TALE
Protein Properties Length: 1061aa    MW: 115094 Da    PI: 6.1585
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c15_11880V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.31.3e-086807171954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+  ++  LAk++gLt +qV++WF N R +
  Pp3c15_11880V3.1.p 680 FEHflHPYPKDVDKLSLAKQTGLTRSQVSNWFINARVR 717
                         5544589*****************************88 PP
2BELL89.92.7e-29546616272
                BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         r +l+ kk kL  +l+eV+ rY++y++ lq vi  F+  ag ++a+pYt lAl+a+SrhFrcLkdai +q+
  Pp3c15_11880V3.1.p 546 RDDLELKKQKLSLMLDEVEARYRRYCDHLQLVITGFNSQAGPNTATPYTILALQAMSRHFRCLKDAIGSQL 616
                         67899**************************************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.2E-17433614IPR006563POX domain
PfamPF075269.1E-33439612IPR006563POX domain
PROSITE profilePS5007111.969658721IPR001356Homeobox domain
SMARTSM003893.9E-9661725IPR001356Homeobox domain
CDDcd000864.91E-12661722No hitNo description
SuperFamilySSF466893.94E-16662728IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-27664727IPR009057Homeodomain-like
PfamPF059202.7E-17678717IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025017anatomyplant spore
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 1061 aa     Download sequence    Send to blast
MDSSEPLRAY AADTNHNLQA DSYNSSLMAS DSYNFLTGVG VLEVPLKEPS QSQAPKTSEG  60
AAQNSSGPLI DTLYTNHEPS PTSGSFPSRS TPVSKSNNWE NINGGGLYSN SNMQNILISG  120
SGIMAAPTST ATAQLLIGGL HGGSFNDGGH SDHGSVYYTP SNNQEESMAQ LYYVNAAAGF  180
SNAGFHSDGR QAGLVTTLLY PPQEGGTTAP QSSSDQSQQQ FGVPFISQTA LAHGAVSQRA  240
LEASGAIPGL SLHDHSASRS GNHHYNWRNG GNEHSFLPMN EELNQNHQSQ FDTDLPQYGI  300
TRACQADLSR MHQTDHLQSE IGLQMDRSHG VSVTGQGLSL SLSSHQSHFH SGGGQLPDSE  360
QMNAVAAQAA AIAKTKELAS RYLTGASADL SRFRTSSRDD VMGMGARFLQ EHMDSGGRKH  420
LASSSYSGPS GTAGSSNHIS ASKFLRSAQA ILNEVCRVTP LKRPPKSVRS SDQQHWSMAG  480
GSSTSVDANL TYNGREERSG MLAGEVDSAR DPASFVTTSS LVTVSQVPLE SEMIQGLAEA  540
ARCESRDDLE LKKQKLSLML DEVEARYRRY CDHLQLVITG FNSQAGPNTA TPYTILALQA  600
MSRHFRCLKD AIGSQLRIVK RTLGEDDRTG QGETSRLRYV DQQIRQQRAL QQLGMLQQHA  660
WRPQRGLPER AVSVLRAWLF EHFLHPYPKD VDKLSLAKQT GLTRSQVSNW FINARVRLWK  720
PMVEEMYVEE QKEYSEDHST ALAQSERMAR DQVEIENNTY EQYEGGRGHS GLLHEISAGA  780
QSSRLPNGVK RNDDREHDAG ASVSEAGAMS SDTNTEFHSQ PLPRGHHLDV GVAGSYNPEG  840
REVKKPKLNS VSDAFNSNSS TALIHPGMNV DTGENCAQPQ NFSPEDELDL QGKGDTDFGA  900
HSQSMNQINQ DENGYTISQR GATTVDQLEA NVASGTFGSY NSNIGHRYGN EDYASRTISA  960
GLTTSTGVSL TLGLRHCDAN QLGSSMVSPT LTKNPYNMDM NDQMNQLNRV DHFEGRIEGI  1020
SSNGQSSATM SNGHYNQITV HENTNNSTQQ LSPHHEFVTS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A2e-16667724158Homeobox protein Meis1
4xrs_B2e-16667724158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024396314.10.0BEL1-like homeodomain protein 2 isoform X1
RefseqXP_024396315.10.0BEL1-like homeodomain protein 2 isoform X1
RefseqXP_024396317.10.0BEL1-like homeodomain protein 2 isoform X1
RefseqXP_024396318.10.0BEL1-like homeodomain protein 2 isoform X1
TrEMBLA9TLE70.0A9TLE7_PHYPA; Predicted protein
STRINGPP1S258_6V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.11e-68BEL1-like homeodomain 7
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]