PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

TALE

Protein Properties

Length: 1061aa MW: 115094 Da PI: 6.1585

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c15_11880V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	26.3	1.3e-08	680	717	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ ++ LAk++gLt +qV++WF N R + Pp3c15_11880V3.1.p 680 FEHflHPYPKDVDKLSLAKQTGLTRSQVSNWFINARVR 717 5544589*****************************88 PP
2	BELL	89.9	2.7e-29	546	616	2	72
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 r +l+ kk kL +l+eV+ rY++y++ lq vi F+ ag ++a+pYt lAl+a+SrhFrcLkdai +q+ Pp3c15_11880V3.1.p 546 RDDLELKKQKLSLMLDEVEARYRRYCDHLQLVITGFNSQAGPNTATPYTILALQAMSRHFRCLKDAIGSQL 616 67899**************************************************************9996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	2.2E-17	433	614	IPR006563	POX domain
Pfam	PF07526	9.1E-33	439	612	IPR006563	POX domain
PROSITE profile	PS50071	11.969	658	721	IPR001356	Homeobox domain
SMART	SM00389	3.9E-9	661	725	IPR001356	Homeobox domain
CDD	cd00086	4.91E-12	661	722	No hit	No description
SuperFamily	SSF46689	3.94E-16	662	728	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.4E-27	664	727	IPR009057	Homeodomain-like
Pfam	PF05920	2.7E-17	678	717	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0025017	anatomy	plant spore
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 1061 aa Download sequence Send to blast
MDSSEPLRAY AADTNHNLQA DSYNSSLMAS DSYNFLTGVG VLEVPLKEPS QSQAPKTSEG 60 AAQNSSGPLI DTLYTNHEPS PTSGSFPSRS TPVSKSNNWE NINGGGLYSN SNMQNILISG 120 SGIMAAPTST ATAQLLIGGL HGGSFNDGGH SDHGSVYYTP SNNQEESMAQ LYYVNAAAGF 180 SNAGFHSDGR QAGLVTTLLY PPQEGGTTAP QSSSDQSQQQ FGVPFISQTA LAHGAVSQRA 240 LEASGAIPGL SLHDHSASRS GNHHYNWRNG GNEHSFLPMN EELNQNHQSQ FDTDLPQYGI 300 TRACQADLSR MHQTDHLQSE IGLQMDRSHG VSVTGQGLSL SLSSHQSHFH SGGGQLPDSE 360 QMNAVAAQAA AIAKTKELAS RYLTGASADL SRFRTSSRDD VMGMGARFLQ EHMDSGGRKH 420 LASSSYSGPS GTAGSSNHIS ASKFLRSAQA ILNEVCRVTP LKRPPKSVRS SDQQHWSMAG 480 GSSTSVDANL TYNGREERSG MLAGEVDSAR DPASFVTTSS LVTVSQVPLE SEMIQGLAEA 540 ARCESRDDLE LKKQKLSLML DEVEARYRRY CDHLQLVITG FNSQAGPNTA TPYTILALQA 600 MSRHFRCLKD AIGSQLRIVK RTLGEDDRTG QGETSRLRYV DQQIRQQRAL QQLGMLQQHA 660 WRPQRGLPER AVSVLRAWLF EHFLHPYPKD VDKLSLAKQT GLTRSQVSNW FINARVRLWK 720 PMVEEMYVEE QKEYSEDHST ALAQSERMAR DQVEIENNTY EQYEGGRGHS GLLHEISAGA 780 QSSRLPNGVK RNDDREHDAG ASVSEAGAMS SDTNTEFHSQ PLPRGHHLDV GVAGSYNPEG 840 REVKKPKLNS VSDAFNSNSS TALIHPGMNV DTGENCAQPQ NFSPEDELDL QGKGDTDFGA 900 HSQSMNQINQ DENGYTISQR GATTVDQLEA NVASGTFGSY NSNIGHRYGN EDYASRTISA 960 GLTTSTGVSL TLGLRHCDAN QLGSSMVSPT LTKNPYNMDM NDQMNQLNRV DHFEGRIEGI 1020 SSNGQSSATM SNGHYNQITV HENTNNSTQQ LSPHHEFVTS *

Sequence ? help Back to Top

Protein Sequence Length: 1061 aa Download sequence Send to blast

MDSSEPLRAY AADTNHNLQA DSYNSSLMAS DSYNFLTGVG VLEVPLKEPS QSQAPKTSEG  60
AAQNSSGPLI DTLYTNHEPS PTSGSFPSRS TPVSKSNNWE NINGGGLYSN SNMQNILISG  120
SGIMAAPTST ATAQLLIGGL HGGSFNDGGH SDHGSVYYTP SNNQEESMAQ LYYVNAAAGF  180
SNAGFHSDGR QAGLVTTLLY PPQEGGTTAP QSSSDQSQQQ FGVPFISQTA LAHGAVSQRA  240
LEASGAIPGL SLHDHSASRS GNHHYNWRNG GNEHSFLPMN EELNQNHQSQ FDTDLPQYGI  300
TRACQADLSR MHQTDHLQSE IGLQMDRSHG VSVTGQGLSL SLSSHQSHFH SGGGQLPDSE  360
QMNAVAAQAA AIAKTKELAS RYLTGASADL SRFRTSSRDD VMGMGARFLQ EHMDSGGRKH  420
LASSSYSGPS GTAGSSNHIS ASKFLRSAQA ILNEVCRVTP LKRPPKSVRS SDQQHWSMAG  480
GSSTSVDANL TYNGREERSG MLAGEVDSAR DPASFVTTSS LVTVSQVPLE SEMIQGLAEA  540
ARCESRDDLE LKKQKLSLML DEVEARYRRY CDHLQLVITG FNSQAGPNTA TPYTILALQA  600
MSRHFRCLKD AIGSQLRIVK RTLGEDDRTG QGETSRLRYV DQQIRQQRAL QQLGMLQQHA  660
WRPQRGLPER AVSVLRAWLF EHFLHPYPKD VDKLSLAKQT GLTRSQVSNW FINARVRLWK  720
PMVEEMYVEE QKEYSEDHST ALAQSERMAR DQVEIENNTY EQYEGGRGHS GLLHEISAGA  780
QSSRLPNGVK RNDDREHDAG ASVSEAGAMS SDTNTEFHSQ PLPRGHHLDV GVAGSYNPEG  840
REVKKPKLNS VSDAFNSNSS TALIHPGMNV DTGENCAQPQ NFSPEDELDL QGKGDTDFGA  900
HSQSMNQINQ DENGYTISQR GATTVDQLEA NVASGTFGSY NSNIGHRYGN EDYASRTISA  960
GLTTSTGVSL TLGLRHCDAN QLGSSMVSPT LTKNPYNMDM NDQMNQLNRV DHFEGRIEGI  1020
SSNGQSSATM SNGHYNQITV HENTNNSTQQ LSPHHEFVTS *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	2e-16	667	724	1	58	Homeobox protein Meis1
4xrs_B	2e-16	667	724	1	58	Homeobox protein Meis1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024396314.1	0.0	BEL1-like homeodomain protein 2 isoform X1
Refseq	XP_024396315.1	0.0	BEL1-like homeodomain protein 2 isoform X1
Refseq	XP_024396317.1	0.0	BEL1-like homeodomain protein 2 isoform X1
Refseq	XP_024396318.1	0.0	BEL1-like homeodomain protein 2 isoform X1
TrEMBL	A9TLE7	0.0	A9TLE7_PHYPA; Predicted protein
STRING	PP1S258_6V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP133	16	172

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16400.1	1e-68	BEL1-like homeodomain 7

Link Out ? help Back to Top
Phytozome	Pp3c15_11880V3.1.p
Entrez Gene	5942661

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]