PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pp3c14_9940V3.1.p | ||||||||
Common Name | PHYPADRAFT_79416 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 227aa MW: 24962.8 Da PI: 8.1367 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.3 | 7.9e-18 | 6 | 55 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+Wv+eIr+p +r++lg+f tae+Aa a+++a++ + g Pp3c14_9940V3.1.p 6 RYRGVRQRH-WGSWVSEIRHP-----LlkTRVWLGTFETAEDAAHAYDEAARLMCG 55 69******9.**********8.....334**********************87765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.98E-31 | 5 | 65 | No hit | No description |
Pfam | PF00847 | 5.9E-11 | 6 | 55 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.2E-20 | 6 | 64 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.6E-34 | 6 | 63 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.824 | 6 | 63 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.8E-38 | 6 | 69 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-10 | 7 | 18 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-10 | 29 | 45 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 227 aa Download sequence Send to blast |
MGRPQRYRGV RQRHWGSWVS EIRHPLLKTR VWLGTFETAE DAAHAYDEAA RLMCGARART 60 NFPYDPNAPK GLNSQMLSAT LSAKLQRWYV QSQQRGGAQG KTKDARMTQS LTCLCLDAEQ 120 SNLGIWQKKT GKQAEANWVR KVQFRDNASL HADSPQPENS SGSSMSEEDK FAAEMIEELL 180 GHSPGQFSDF GSPALSDSSC SSSPCSGITA ASKWDVSLSH FDCISS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-16 | 5 | 63 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-16 | 2 | 68 | 1 | 68 | ATERF1 |
3gcc_A | 2e-16 | 2 | 68 | 1 | 68 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024393916.1 | 1e-169 | ethylene-responsive transcription factor ERF003-like | ||||
TrEMBL | A0A2K1JHW1 | 1e-168 | A0A2K1JHW1_PHYPA; Uncharacterized protein | ||||
STRING | PP1S79_25V6.1 | 1e-157 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G25190.1 | 5e-40 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pp3c14_9940V3.1.p |
Entrez Gene | 5929068 |
Publications ? help Back to Top | |||
---|---|---|---|
|