PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c14_9100V3.6.p
Common NamePHYPADRAFT_79459
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 530aa    MW: 57843.1 Da    PI: 8.609
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c14_9100V3.6.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.26.9e-09298346255
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        ++ h  rEr RRd++  +f  L +llP++     +K + ++i+e  ++ +ksLq
  Pp3c14_9100V3.6.p 298 KVEHIVRERWRRDDMAGKFLALESLLPPS-----TKRDRSTIVEDSIKLVKSLQ 346
                        56799**********************99.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.335296345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-10298365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.38E-8298347No hitNo description
SuperFamilySSF474597.98E-11298363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-6298346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-7302351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MQVQTEEKYT TGEMMQAVDN HCHSSPMLQA PTSWAESSTP STMDFSYDSL YHSYTPSGYN  60
AFPSVLSQTL CELDIDNSIH KLFEGLPEIV EPDIVGRDGS VCKGPAVSVS TVFQNAFPAH  120
GSRPSSSPCA FGSQTEVIPV QDIRTPVTHA TGDSAKALMS PMPKPQEMTP PVTVAADRKG  180
RPRTFKSKAA PRQDRIVENE TRTNQPSLKK DLETIPTRIQ AVPHIQVQAL QHPSTSHCLL  240
PATAAVGDPS IVDVSQHGPF HSGVGLGPQM CPRPPKRSRK DTAHTANIRT QKTRYFDKVE  300
HIVRERWRRD DMAGKFLALE SLLPPSTKRD RSTIVEDSIK LVKSLQHRKD EILKRRHELR  360
SAVASGGLPN TPGVKLNKII QKIGSLAVIP VYNLQALESG SPSSSSMALS SGLNTAGVIR  420
PLEVQPSGQN AVLQIPIPLS DCVKRFFVQS ELASDNVVLE MICEQIPNFQ SLLLKSMESL  480
GLEVVRCSII RTLKRFVCNI TVKPFHCSAA GKLSSTDIME GLYSAFGTP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024395235.10.0uncharacterized protein LOC112291683
RefseqXP_024395236.10.0uncharacterized protein LOC112291683
RefseqXP_024395237.10.0uncharacterized protein LOC112291683
TrEMBLA0A2K1JGZ30.0A0A2K1JGZ3_PHYPA; Uncharacterized protein
STRINGPP1S79_101V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.15e-08bHLH family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]