PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pp3c14_6250V3.1.p | ||||||||
Common Name | PHYPADRAFT_167567 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 794aa MW: 85184.3 Da PI: 10.2586 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 23.7 | 1e-07 | 407 | 467 | 1 | 61 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 eke +r rr q NRe+Ar +RK+ +eeL++k+ eL+ae + L k+le+ ke +++ Pp3c14_6250V3.1.p 407 EKEARRLRRVQANRESARQTIRRKQVLCEELARKAGELQAEKDNLSKTLEQKAKELRNHQE 467 799*******************************************999999998887765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.5E-4 | 405 | 467 | No hit | No description |
SMART | SM00338 | 1.7E-5 | 407 | 471 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.979 | 409 | 472 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 1.22E-13 | 412 | 463 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 794 aa Download sequence Send to blast |
MTPVPRDCYD SRIMEAPGEV KKEPVPLKSA AGKETGRAIK RKRAASESEH SHKRSHGASG 60 TNSKSRMPSK VKAPKDAGAV ISSAWKRKRS NMVEEDPELD SEHVMNAAQA LFDLFAGAGI 120 PRKDTVESKP GDVKSGGVKW AGKKSRSSRC SKKADDSCAC KLSSSSTTSA TVTDIPEILD 180 SSTSRNHQLV VSHPHASEAG VETVHVEVDS EADADAKSTD MSPCGLDFDR GYRLLSQSSV 240 ESTLLDSRAE SPSSPLRVLR SEADLIPKLE EELMLQFGFQ RNLPVRPVTK PSLLRKPKAE 300 ENCTIEGDEM KEAKVALKQV QRRKSRASNV KGQSLILQGD VLDVPTTSSG TVLKECIEEN 360 KFQVPVTLNL FEPVKTETGR VKLEGRELYQ TGSSTQVRLR SALSEAEKEA RRLRRVQANR 420 ESARQTIRRK QVLCEELARK AGELQAEKDN LSKTLEQKAK ELRNHQEINR HLKEQILLQS 480 GSAETSLPAN DGGNSASPAP AAGPVGGMPM LPYWWAFALA QSVAATQSSG VPQLPEGVVV 540 PPDFNVVFAA TVAALNNGAA MNPNMWMNLM GNMSKAQVPG MVAAPDQQAT LTHSAARPSV 600 TSELPPAGGT DRFQVLGRSP VAKSSASSSP MKGVTNTDAT VIMSKPSSQV SGKIPSGLPS 660 MLSTSHSRGK YQVASLGAPA SHSLQTTGSG MTQYHVAGDG IASASTTLSL GPGSHQLQQS 720 GRMDQLRKAG NLRFFPTIGN GVQGFLGPRV GAYQSEAAAK ATEARRRRRE LKRTKSLQSQ 780 LQQEKKLVST KSL* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ppa.15641 | 0.0 | gametophore| protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024394864.1 | 0.0 | uncharacterized protein LOC112291539 isoform X1 | ||||
Refseq | XP_024394865.1 | 0.0 | uncharacterized protein LOC112291539 isoform X1 | ||||
TrEMBL | A0A2K1JGL9 | 0.0 | A0A2K1JGL9_PHYPA; Uncharacterized protein | ||||
STRING | PP1S150_133V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP4569 | 13 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G19490.1 | 7e-16 | bZIP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pp3c14_6250V3.1.p |
Entrez Gene | 5935694 |
Publications ? help Back to Top | |||
---|---|---|---|
|