PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c14_4880V3.19.p | ||||||||
Common Name | PHYPADRAFT_188998 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | bZIP | ||||||||
Protein Properties | Length: 341aa MW: 37448.4 Da PI: 8.8838 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 34.7 | 3.9e-11 | 45 | 85 | 4 | 44 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 k+ rr+++NReAAr+sR+RKka++++Le +L + ++ Pp3c14_4880V3.19.p 45 FKVLRRLAQNREAARKSRLRKKAYVQQLESSRIKLNELEQE 85 5899*************************865555554444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 0.0046 | 42 | 95 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.059 | 44 | 88 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 4.8E-8 | 45 | 90 | No hit | No description |
Pfam | PF00170 | 3.6E-8 | 46 | 87 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.88E-7 | 46 | 90 | No hit | No description |
CDD | cd14708 | 1.19E-22 | 46 | 99 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 49 | 64 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 2.7E-30 | 141 | 215 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MRDSSAKTDT SSDMDGDPKL DDGHHLVTGG SNDSSHEAGT KNGDFKVLRR LAQNREAARK 60 SRLRKKAYVQ QLESSRIKLN ELEQELQRTR QQQGLYLGPG SCSVDQNGHS AGGTWGTNSS 120 SVAAAFDMEY AKWVEEHHRQ TSKLRAALQG HVADSELRVL VDAGLAHYDD LFRLKAVVSK 180 ADVFHLVSGI WKSPAERCFM WMGGFRPSGL LKILLPQIEP LTDQQASNIC NLQKASQQVE 240 DALSQGMEVL QQSLADALSV GSLGSSANVA IYMGQMAMAM GKLGTLEAFM CQADKIRQQT 300 LQQMHRVLTT RQAARGLLAM GDYFARLRAL SSLWSARPRE * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.14202 | 0.0 | gametophore| protonema |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024394701.1 | 0.0 | transcription factor TGA2.3-like isoform X1 | ||||
Refseq | XP_024394702.1 | 0.0 | transcription factor TGA2.3-like isoform X1 | ||||
Refseq | XP_024394703.1 | 0.0 | transcription factor TGA2.3-like isoform X1 | ||||
Refseq | XP_024394704.1 | 0.0 | transcription factor TGA2.3-like isoform X1 | ||||
Refseq | XP_024394705.1 | 0.0 | transcription factor TGA2.3-like isoform X1 | ||||
Refseq | XP_024394707.1 | 0.0 | transcription factor TGA2.3-like isoform X1 | ||||
Refseq | XP_024394708.1 | 0.0 | transcription factor TGA2.3-like isoform X1 | ||||
Refseq | XP_024394709.1 | 0.0 | transcription factor TGA2.3-like isoform X1 | ||||
Refseq | XP_024394710.1 | 0.0 | transcription factor TGA2.3-like isoform X1 | ||||
Refseq | XP_024394711.1 | 0.0 | transcription factor TGA2.3-like isoform X1 | ||||
Swissprot | O24160 | 1e-141 | TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1 | ||||
TrEMBL | A9SW24 | 0.0 | A9SW24_PHYPA; Predicted protein | ||||
STRING | PP1S126_196V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12250.2 | 1e-124 | TGACG motif-binding factor 6 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c14_4880V3.19.p |
Entrez Gene | 5933724 |
Publications ? help Back to Top | |||
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