PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

G2-like

Protein Properties

Length: 470aa MW: 49376.4 Da PI: 6.8063

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c14_26270V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.7	6.1e-34	52	106	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWtpeLH+rFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Pp3c14_26270V3.1.p 52 KQRLRWTPELHDRFVDAVTQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 106 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.051	49	109	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.7E-33	50	107	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.13E-17	51	106	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.6E-26	52	107	IPR006447	Myb domain, plants
Pfam	PF00249	3.8E-9	54	105	IPR001005	SANT/Myb domain
Pfam	PF14379	3.2E-25	139	185	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence Send to blast
MYQNKKFSTT SLMPQRSASQ APEPRGSSAA GASTNSAGSP GGGSGGGGSA AKQRLRWTPE 60 LHDRFVDAVT QLGGPDRATP KGVLRVMGVQ GLTIYHVKSH LQKYRLAKYI PESLSDGGKS 120 DKKKNQADLL PALDATSGIQ ITEALRMQME VQKRLHEQLE VQRHLQLRIE AQGKYLQKII 180 EEQQRVGALN NGASTTADTT TAPTTTEATQ GQTGSVVETK PALPLTNEAP TSNSVPTAPV 240 SSSSLGLTQA TILTSQQPSQ TQYGYETFTN PPVLEGSSVQ GASKRTRMED GAGQPVTGQL 300 ETQQVSGVTQ PGGPFMQPGH IQGSCGVFHS NQSDFASGST FSPRQGGGSF TQAPPLSQQA 360 YSQQQSLEGV FNTQSFLPAN DADTSMPSQV QGTGAQPPPD SSTSGSTRQP PKLSGELDTG 420 SFLTNDKEAT LPTSERGRGD GGPAPLPQVG MYEQWEHVGS GGHLFNQDG*

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence Send to blast

MYQNKKFSTT SLMPQRSASQ APEPRGSSAA GASTNSAGSP GGGSGGGGSA AKQRLRWTPE  60
LHDRFVDAVT QLGGPDRATP KGVLRVMGVQ GLTIYHVKSH LQKYRLAKYI PESLSDGGKS  120
DKKKNQADLL PALDATSGIQ ITEALRMQME VQKRLHEQLE VQRHLQLRIE AQGKYLQKII  180
EEQQRVGALN NGASTTADTT TAPTTTEATQ GQTGSVVETK PALPLTNEAP TSNSVPTAPV  240
SSSSLGLTQA TILTSQQPSQ TQYGYETFTN PPVLEGSSVQ GASKRTRMED GAGQPVTGQL  300
ETQQVSGVTQ PGGPFMQPGH IQGSCGVFHS NQSDFASGST FSPRQGGGSF TQAPPLSQQA  360
YSQQQSLEGV FNTQSFLPAN DADTSMPSQV QGTGAQPPPD SSTSGSTRQP PKLSGELDTG  420
SFLTNDKEAT LPTSERGRGD GGPAPLPQVG MYEQWEHVGS GGHLFNQDG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	3e-24	52	109	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-24	52	109	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-24	52	109	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-24	52	109	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.4715	0.0	gametophore\| protonema\| sporophyte

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024394212.1	0.0	myb-related protein 2-like
TrEMBL	A0A2K1JK89	0.0	A0A2K1JK89_PHYPA; Uncharacterized protein
STRING	PP1S269_36V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	5e-69	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pp3c14_26270V3.1.p
Entrez Gene	5943182

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]