PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c14_24330V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | LBD | ||||||||
Protein Properties | Length: 244aa MW: 26268.4 Da PI: 8.0154 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 61.2 | 2.8e-19 | 57 | 117 | 32 | 92 |
DUF260 32 nvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 + ++FG++nv+k+l++lp+ +red ++sl+yeA+a ++dPvyG+vg i+ lqqq +++++ Pp3c14_24330V3.2.p 57 GTLQVFGVANVTKMLHELPPPHREDCVNSLAYEADAGVQDPVYGCVGAISVLQQQGKTAEV 117 5669***************************************************988775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 10.127 | 25 | 125 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.0E-17 | 58 | 117 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MRQKLNSNDF MVSLALSLLL CGFNVDRSLV PSARARISII IQPLHQFGTS DSKKRGGTLQ 60 VFGVANVTKM LHELPPPHRE DCVNSLAYEA DAGVQDPVYG CVGAISVLQQ QGKTAEVVIT 120 THNYLAFCGA LADTTGDSNL RDQDFVRPSP SPPAPPTLTP VLLFANLLLQ STSQLSYLGL 180 LKLLRTINLP TLIAPLLQLI HQMKNHPPSN NHSQPLLLGT PQGLLLQNSS GFLAVLLEHL 240 SLS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-20 | 47 | 111 | 32 | 96 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-20 | 47 | 111 | 32 | 96 | LOB family transfactor Ramosa2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | PP1S69_130V6.1 | 1e-128 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 6e-21 | LOB domain-containing protein 25 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c14_24330V3.2.p |