PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c14_23520V3.3.p
Common NamePHYPADRAFT_164436
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 730aa    MW: 79550 Da    PI: 6.4742
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c14_23520V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH505.4e-16527573455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn+ ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k+Lq
  Pp3c14_23520V3.3.p 527 VHNQSERRRRDRINEKMRALQELIPNS-----NKTDKASMLDEAIEYLKMLQ 573
                         6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.16E-20521582IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.298523572IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.53E-17526577No hitNo description
Gene3DG3DSA:4.10.280.103.1E-18527580IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-13527573IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-17529578IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 730 aa     Download sequence    Send to blast
MNERERERGE GGKEGGRRRG VVICDDGSLS SWSRLFISCR TMSLCVPEWD RNNDMLDVVI  60
PSNDFHGPVN WKGEDVRSMK IHFSQLALAP VGQETEDGVT PCKPDTPKTG ASPEAVANET  120
ATEPHPPHNI DVDSDEMVSW LQYPLDDTLE RNYCSDFFGE LPDANTQLLK ESFAHGSTKI  180
SPRISFSGAS GLDGGSNRGT TADAAMLLGA GRAAGFFPQA GVEAFSKVRT IHSPQQHSSL  240
PRWPQPHNPN SPNGSSECAT SYLTSAKVST STSASPSSPM LPPRMLLGSP IPNSSNTPQA  300
SRPGSMNFSH FSRPAAMVKA NLHSLAGMNC TPPPCGRFKQ QQGLPGCRPI IEACTSTESS  360
IAESTTTGQG PLVSHQEVKT QPAVLEREQI NNVEESRWPS APGLSPTKDR DCVVSGGDCK  420
SLTPDQETCR LSGVTNGAVL ASSEKGASHC TQHLDIQEPT ITSSSGRYAT SAEPPKEPVT  480
GTKRKSSERE EPECQSEDME DESVDTKQKP ATTGRVSTTK RSRAAEVHNQ SERRRRDRIN  540
EKMRALQELI PNSNKTDKAS MLDEAIEYLK MLQLQLQMMS IRTGMTLPPM VMPPGLQHMQ  600
MPQMGAIPSM GMVQMGLGMG MMDMAAQGRA VMSMQSHAGP SLNGNMASTS SMIDPHDLRY  660
QQPGDMDFNT YTAHQHQSMP MTQALNTDKY NAYMLQQHQF ILQQQQQHLH QQPQQHHQQA  720
PNMSGVPPH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1531536ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.76680.0protonema
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024394543.10.0hormone receptor 4-like isoform X2
TrEMBLA0A2K1JJ170.0A0A2K1JJ17_PHYPA; Uncharacterized protein
STRINGPP1S69_37V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.23e-36phytochrome interacting factor 3
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]