PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c14_23520V3.21.p | ||||||||
Common Name | PHYPADRAFT_164436 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | bHLH | ||||||||
Protein Properties | Length: 729aa MW: 79312.5 Da PI: 6.227 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50 | 5.4e-16 | 526 | 572 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+k+Lq Pp3c14_23520V3.21.p 526 VHNQSERRRRDRINEKMRALQELIPNS-----NKTDKASMLDEAIEYLKMLQ 572 6*************************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 9.16E-20 | 520 | 581 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.298 | 522 | 571 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.52E-17 | 525 | 576 | No hit | No description |
Pfam | PF00010 | 2.4E-13 | 526 | 572 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.1E-18 | 526 | 579 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.3E-17 | 528 | 577 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 729 aa Download sequence Send to blast |
MSLCVPEWDR NNDMLDVVIP SNDFHGPVNW KGEDVRSMKI HFSQLALAPV PDQDTLGVGW 60 NDNEHVGMHG QGCKGNKSQW DVNYSSGWNS GQETEDGVTP CKPDTPKTGA SPEAVANETA 120 TEPHPPHNID VDSDEMVSWL QYPLDDTLER NYCSDFFGEL PDANTQLLKE SFAHGSTKIS 180 PRISFSGASG LDGGSNRGTT ADAAMLLGAG RAAGFFPQAG VEAFSKVRTI HSPQQHSSLP 240 RWPQPHNPNS PNGSSECATS YLTSAKVSTS TSASPSSPML PPRMLLGSPI PNSSNTPQAS 300 RPGSMNFSHF SRPAAMVKAN LHSLAGMNCT PPPCGRFKQQ QGLPGCRPII EACTSTESSI 360 AESTTTGQGP LVSHQEVKTQ PAVLEREQIN NVEESRWPSA PGLSPTKDRD CVVSGGDCKS 420 LTPDQETCRL SGVTNGAVLA SSEKGASHCT QHLDIQEPTI TSSSGRYATS AEPPKEPVTG 480 TKRKSSEREE PECQSEDMED ESVDTKQKPA TTGRVSTTKR SRAAEVHNQS ERRRRDRINE 540 KMRALQELIP NSNKTDKASM LDEAIEYLKM LQLQLQMMSI RTGMTLPPMV MPPGLQHMQM 600 PQMGAIPSMG MVQMGLGMGM MDMAAQGRAV MSMQSHAGPS LNGNMASTSS MIDPHDLRYQ 660 QPGDMDFNTY TAHQHQSMPM TQALNTDKYN AYMLQQHQFI LQQQQQHLHQ QPQQHHQQAP 720 NMSGVPPH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 530 | 535 | ERRRRD |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.7668 | 0.0 | protonema |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024394544.1 | 0.0 | hormone receptor 4-like isoform X3 | ||||
Refseq | XP_024394545.1 | 0.0 | hormone receptor 4-like isoform X3 | ||||
Refseq | XP_024394546.1 | 0.0 | hormone receptor 4-like isoform X3 | ||||
TrEMBL | A9SDX1 | 0.0 | A9SDX1_PHYPA; Predicted protein | ||||
STRING | PP1S69_37V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 3e-36 | phytochrome interacting factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c14_23520V3.21.p |
Entrez Gene | 5927830 |
Publications ? help Back to Top | |||
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