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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c14_23520V3.17.p | ||||||||
Common Name | PHYPADRAFT_164436 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | bHLH | ||||||||
Protein Properties | Length: 689aa MW: 75269.2 Da PI: 6.4757 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.1 | 5e-16 | 486 | 532 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+k+Lq Pp3c14_23520V3.17.p 486 VHNQSERRRRDRINEKMRALQELIPNS-----NKTDKASMLDEAIEYLKMLQ 532 6*************************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 8.37E-20 | 480 | 541 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.298 | 482 | 531 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.27E-17 | 485 | 536 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.9E-18 | 486 | 539 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-13 | 486 | 532 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.3E-17 | 488 | 537 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 689 aa Download sequence Send to blast |
MNERERERGE GGKEGGRRRG VVICDDGSLS SWSRLFISCR TMSLCVPEWD RNNDMLDVVI 60 PSNDFHGPVN WKGEDVRSMK IHFSQLALAP VGQETEDGVT PCKPDTPKTG ASPEAVANET 120 ATEPHPPHNI DVDSDEMVSW LQYPLDDTLE RNYCSDFFGE LPDANTQLLK ESFAHGSTKI 180 SPRISFSGAS GLDGGSNRGT TADAAMLLGA GRAAGFFPQA GVEAFSKVRT IHSPQQHSSL 240 PRWPQPHNPN SPNGSSECAT SYLTSAKVST STSASPSSPM LPPRMLLGSP IPNSSNTPQA 300 SRPGSMNFSH FSRPAAMVKA NLHSLAGQGP LVSHQEVKTQ PAVLEREQIN NVEESRWPSA 360 PGLSPTKDRD CVVSGGDCKS LTPDQETCRL SGVTNGAVLA SSEKGASHCT QHLDIQEPTI 420 TSSSGRYATS AEPPKEPVTG TKRKSSEREE PECQSEDMED ESVDTKQKPA TTGRVSTTKR 480 SRAAEVHNQS ERRRRDRINE KMRALQELIP NSNKTDKASM LDEAIEYLKM LQLQLQMMSI 540 RTGMTLPPMV MPPGLQHMQM PQMGAIPSMG MVQMGLGMGM MDMAAQGRAV MSMQSHAGPS 600 LNGNMASTSS MIDPHDLRYQ QPGDMDFNTY TAHQHQSMPM TQALNTDKYN AYMLQQHQFI 660 LQQQQQHLHQ QPQQHHQQAP NMSGVPPH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 490 | 495 | ERRRRD |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.7668 | 0.0 | protonema |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024394543.1 | 0.0 | hormone receptor 4-like isoform X2 | ||||
TrEMBL | A0A2K1JJ17 | 0.0 | A0A2K1JJ17_PHYPA; Uncharacterized protein | ||||
STRING | PP1S69_37V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 7e-40 | phytochrome interacting factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c14_23520V3.17.p |
Entrez Gene | 5927830 |
Publications ? help Back to Top | |||
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