PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c14_23520V3.15.p | ||||||||
Common Name | PHYPADRAFT_164436 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | bHLH | ||||||||
Protein Properties | Length: 770aa MW: 83937.7 Da PI: 6.3548 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 49.9 | 5.7e-16 | 567 | 613 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+k+Lq Pp3c14_23520V3.15.p 567 VHNQSERRRRDRINEKMRALQELIPNS-----NKTDKASMLDEAIEYLKMLQ 613 6*************************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 9.81E-20 | 561 | 622 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.298 | 563 | 612 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.78E-17 | 566 | 617 | No hit | No description |
Pfam | PF00010 | 2.6E-13 | 567 | 613 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.3E-18 | 567 | 620 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.3E-17 | 569 | 618 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 770 aa Download sequence Send to blast |
MNERERERGE GGKEGGRRRG VVICDDGSLS SWSRLFISCR TMSLCVPEWD RNNDMLDVVI 60 PSNDFHGPVN WKGEDVRSMK IHFSQLALAP VPDQDTLGVG WNDNEHVGMH GQGCKGNKSQ 120 WDVNYSSGWN SGQETEDGVT PCKPDTPKTG ASPEAVANET ATEPHPPHNI DVDSDEMVSW 180 LQYPLDDTLE RNYCSDFFGE LPDANTQLLK ESFAHGSTKI SPRISFSGAS GLDGGSNRGT 240 TADAAMLLGA GRAAGFFPQA GVEAFSKVRT IHSPQQHSSL PRWPQPHNPN SPNGSSECAT 300 SYLTSAKVST STSASPSSPM LPPRMLLGSP IPNSSNTPQA SRPGSMNFSH FSRPAAMVKA 360 NLHSLAGMNC TPPPCGRFKQ QQGLPGCRPI IEACTSTESS IAESTTTGQG PLVSHQEVKT 420 QPAVLEREQI NNVEESRWPS APGLSPTKDR DCVVSGGDCK SLTPDQETCR LSGVTNGAVL 480 ASSEKGASHC TQHLDIQEPT ITSSSGRYAT SAEPPKEPVT GTKRKSSERE EPECQSEDME 540 DESVDTKQKP ATTGRVSTTK RSRAAEVHNQ SERRRRDRIN EKMRALQELI PNSNKTDKAS 600 MLDEAIEYLK MLQLQLQMMS IRTGMTLPPM VMPPGLQHMQ MPQMGAIPSM GMVQMGLGMG 660 MMDMAAQGRA VMSMQSHAGP SLNGNMASTS SMIDPHDLRY QQPGDMDFNT YTAHQHQSMP 720 MTQALNTDKY NAYMLQQHQF ILQQQQQHLH QQPQQHHQQA PNMSGVPPH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 571 | 576 | ERRRRD |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.7668 | 0.0 | protonema |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024394541.1 | 0.0 | hormone receptor 4-like isoform X1 | ||||
Refseq | XP_024394542.1 | 0.0 | hormone receptor 4-like isoform X1 | ||||
TrEMBL | A9SDX1 | 0.0 | A9SDX1_PHYPA; Predicted protein | ||||
STRING | PP1S69_37V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 5e-36 | phytochrome interacting factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c14_23520V3.15.p |
Entrez Gene | 5927830 |
Publications ? help Back to Top | |||
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