PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c14_23520V3.12.p
Common NamePHYPADRAFT_164436
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 770aa    MW: 83937.7 Da    PI: 6.3548
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c14_23520V3.12.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.95.7e-16567613455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn+ ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k+Lq
  Pp3c14_23520V3.12.p 567 VHNQSERRRRDRINEKMRALQELIPNS-----NKTDKASMLDEAIEYLKMLQ 613
                          6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.81E-20561622IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.298563612IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.78E-17566617No hitNo description
PfamPF000102.6E-13567613IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-18567620IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-17569618IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 770 aa     Download sequence    Send to blast
MNERERERGE GGKEGGRRRG VVICDDGSLS SWSRLFISCR TMSLCVPEWD RNNDMLDVVI  60
PSNDFHGPVN WKGEDVRSMK IHFSQLALAP VPDQDTLGVG WNDNEHVGMH GQGCKGNKSQ  120
WDVNYSSGWN SGQETEDGVT PCKPDTPKTG ASPEAVANET ATEPHPPHNI DVDSDEMVSW  180
LQYPLDDTLE RNYCSDFFGE LPDANTQLLK ESFAHGSTKI SPRISFSGAS GLDGGSNRGT  240
TADAAMLLGA GRAAGFFPQA GVEAFSKVRT IHSPQQHSSL PRWPQPHNPN SPNGSSECAT  300
SYLTSAKVST STSASPSSPM LPPRMLLGSP IPNSSNTPQA SRPGSMNFSH FSRPAAMVKA  360
NLHSLAGMNC TPPPCGRFKQ QQGLPGCRPI IEACTSTESS IAESTTTGQG PLVSHQEVKT  420
QPAVLEREQI NNVEESRWPS APGLSPTKDR DCVVSGGDCK SLTPDQETCR LSGVTNGAVL  480
ASSEKGASHC TQHLDIQEPT ITSSSGRYAT SAEPPKEPVT GTKRKSSERE EPECQSEDME  540
DESVDTKQKP ATTGRVSTTK RSRAAEVHNQ SERRRRDRIN EKMRALQELI PNSNKTDKAS  600
MLDEAIEYLK MLQLQLQMMS IRTGMTLPPM VMPPGLQHMQ MPQMGAIPSM GMVQMGLGMG  660
MMDMAAQGRA VMSMQSHAGP SLNGNMASTS SMIDPHDLRY QQPGDMDFNT YTAHQHQSMP  720
MTQALNTDKY NAYMLQQHQF ILQQQQQHLH QQPQQHHQQA PNMSGVPPH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1571576ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.76680.0protonema
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024394541.10.0hormone receptor 4-like isoform X1
RefseqXP_024394542.10.0hormone receptor 4-like isoform X1
TrEMBLA9SDX10.0A9SDX1_PHYPA; Predicted protein
STRINGPP1S69_37V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.25e-36phytochrome interacting factor 3
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]