PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c14_21500V3.3.p | ||||||||
Common Name | PHYPADRAFT_71904 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | B3 | ||||||||
Protein Properties | Length: 415aa MW: 46102.4 Da PI: 8.8614 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.3 | 5.6e-13 | 35 | 126 | 2 | 98 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 +k++t ++ l +p +f+ +++ ++ +k +tle +s + W+v++ + ++++ +++GW++Fv +++++ gD + F+l++ s+f Pp3c14_21500V3.3.p 35 IKTMTELT--ITSVLQIPASFV-RCSD-SRIGKVVTLEGPSKENWSVEVGPgTLQRSGLEFRDGWQKFVADHNVQIGDHLFFTLKSYSRF- 120 55552222..234599******.5643.358899***************444555555889**********************9988999. PP .EEEEE- CS B3 92 lvvkvfr 98 v+v++ Pp3c14_21500V3.3.p 121 -QVMVYD 126 .666665 PP | |||||||
2 | B3 | 60 | 4e-19 | 274 | 367 | 4 | 99 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ++++++v + ++vl ++f ++++ + es+++tl ++ g +W vk ++ + ++ +++GW++F +++L+e D++vF+ +++++f +v Pp3c14_21500V3.3.p 274 AMSKAYVYRGFWMVLNRPFSKAYMPQ--ESREVTLCNKAGHEWPVKWLFKETNSSSGFSGGWRRFSLDHRLEESDVCVFEIVDETNFVILV 362 688999*****************855..7889***************99777777889**********************9999******* PP EEE-S CS B3 95 kvfrk 99 ++fr+ Pp3c14_21500V3.3.p 363 HIFRA 367 **995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.26E-19 | 29 | 128 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.5E-19 | 29 | 129 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.407 | 32 | 128 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.91E-17 | 32 | 126 | No hit | No description |
Pfam | PF02362 | 3.0E-10 | 34 | 125 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.6E-6 | 34 | 128 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.3E-20 | 267 | 367 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.53E-23 | 268 | 368 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.46E-25 | 269 | 366 | No hit | No description |
SMART | SM01019 | 1.6E-18 | 271 | 368 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.957 | 271 | 368 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.6E-17 | 273 | 367 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 415 aa Download sequence Send to blast |
MKTTACALCL MNCVRLHGDE CEDADGASAP LPSFIKTMTE LTITSVLQIP ASFVRCSDSR 60 IGKVVTLEGP SKENWSVEVG PGTLQRSGLE FRDGWQKFVA DHNVQIGDHL FFTLKSYSRF 120 QVMVYDESGS PKANATAARN SIAAYKDEPK SLSEAQVGTS VIYRSKGPVA RPKHKVRRKI 180 RTKSATKPVV VVGRSSDLEL ENSDPLVKDI TNVTEIVSDS KPQHQSDTIE IPDSPGAAQP 240 LLVPHVVRGG HKEKVIHAAR LLADTLTNPK IVVAMSKAYV YRGFWMVLNR PFSKAYMPQE 300 SREVTLCNKA GHEWPVKWLF KETNSSSGFS GGWRRFSLDH RLEESDVCVF EIVDETNFVI 360 LVHIFRALGQ PGEDNSDYRP SSSRDWGVDQ RKRKTASNPC VDTNLNYKKP IGFF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 7e-14 | 245 | 366 | 25 | 141 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 7e-14 | 245 | 366 | 25 | 141 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 174 | 180 | KVRRKIR |
2 | 389 | 394 | QRKRKT |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024395529.1 | 0.0 | B3 domain-containing protein Os11g0197600-like | ||||
TrEMBL | A9RXP5 | 0.0 | A9RXP5_PHYPA; Predicted protein | ||||
STRING | PP1S34_303V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-15 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c14_21500V3.3.p |
Entrez Gene | 5922053 |
Publications ? help Back to Top | |||
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