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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c14_21120V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | C2H2 | ||||||||
Protein Properties | Length: 387aa MW: 40860.3 Da PI: 7.6912 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.5 | 0.00022 | 124 | 146 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ Cg+ F ++ L H++ H Pp3c14_21120V3.2.p 124 YECQFCGREFASSQALGGHQNAH 146 99******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.07E-6 | 120 | 151 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.0E-5 | 122 | 150 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 9.6E-6 | 124 | 148 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 12.695 | 124 | 151 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 126 | 146 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010090 | Biological Process | trichome morphogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MTKDSNQSGA QASPYRLSMS NGGRDKEVEL DAQSPGITSA GPSSRPGSAA SDRGCSDSVS 60 PTSGGHTTVD AQVEAGVGTS AASVAVEQCD DDVAECAGGS SLHLSRGHTD CSDSTAPLWE 120 NRKYECQFCG REFASSQALG GHQNAHKRER QEAKRAQLQA NRLAAANSDR STVWGGRGGY 180 GIRQYHGGQQ LVTPHVSRLV IPHSSQLSGN HGSHGAQLMP PHAPASMSTY EGMAPMAHSM 240 SLMNGGVPNH TFPHPMTRGM QCPPSPYFFY YGLLGMSLPG SRPTFGSMYG EHMRYAEFPS 300 MFAVLPQGMH SSQPWSHSQL QQGGMPSGRF LVKGMDGMRT ENLVRPRPLA QAPGALQTHE 360 QRPFSGGGAP NNVLDLQLGL GNSPTG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024395192.1 | 0.0 | uncharacterized protein LOC112291664 | ||||
TrEMBL | A0A2K1JIN5 | 0.0 | A0A2K1JIN5_PHYPA; Uncharacterized protein | ||||
STRING | PP1S34_257V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58070.1 | 6e-12 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c14_21120V3.2.p |