PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c14_20800V3.4.p
Common NamePHYPADRAFT_161610
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family B3
Protein Properties Length: 885aa    MW: 97060.6 Da    PI: 8.0732
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c14_20800V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.21.2e-12451288100
                         -HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                  B3   8 sdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                           ++k+++l +p  +++eh g++   + t +led +g +W v        ++ +l++GWk F+ + +L+ gD ++F l+  ++f  +v+vf
  Pp3c14_20800V3.4.p  45 TPSNKNCNLQIPAAYVREHmGMS--IEETYILEDVTGSEWVVIS------SSATLKNGWKAFAVDYQLEKGDQIMFGLVAPKRF--YVSVF 125
                         4577899************6444..4559***********8877......4567************************987888..***** PP

                         -SS CS
                  B3  98 rks 100
                         +ks
  Pp3c14_20800V3.4.p 126 DKS 128
                         985 PP
2B342.31.3e-135746711199
                         HHTT-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SE CS
                  B3  11 lksgrlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..se 89 
                         + s+++v+  +f+++           g+ ++++ +l+l d++g + + +   r + +ry+l++GWk+Fv+ ++++e D++v++l++r   +
  Pp3c14_20800V3.4.p 574 NPSAIIVMRSSFVKNTyacfvtvkcaGLLPTKPAELSLVDTDGYVRKANW--RPG-KRYMLGAGWKDFVETHNVQESDVCVLELIDRsqVN 661
                         44566677777775448888888888888999***********9999999..555.59*************************99662455 PP

                         E..EEEEE-S CS
                  B3  90 felvvkvfrk 99 
                          +l+v+vfr+
  Pp3c14_20800V3.4.p 662 CKLLVHVFRA 671
                         5678888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-1632132IPR015300DNA-binding pseudobarrel domain
CDDcd100174.62E-1434126No hitNo description
SMARTSM010191.3E-736128IPR003340B3 DNA binding domain
PROSITE profilePS5086311.39238128IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.3E-1345128IPR015300DNA-binding pseudobarrel domain
PfamPF023622.2E-945127IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.1E-13570681IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-15573677IPR015300DNA-binding pseudobarrel domain
CDDcd100171.13E-12580670No hitNo description
SMARTSM010190.0012585672IPR003340B3 DNA binding domain
PfamPF023621.7E-10589671IPR003340B3 DNA binding domain
PROSITE profilePS508638.741608672IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 885 aa     Download sequence    Send to blast
MGKGGGSGGD YEACTVCTRV CQTTHGKGLP HSVPRFLKTI PEYSTPSNKN CNLQIPAAYV  60
REHMGMSIEE TYILEDVTGS EWVVISSSAT LKNGWKAFAV DYQLEKGDQI MFGLVAPKRF  120
YVSVFDKSGM EKVSTRQHLN SMGSTGTAMD KESELAPQVS KPMSGGAEDP CTPMNLAHSK  180
GATRRARSND TSQHNSQLLV SNDVGALPSR NASDQNGNQK GILCNGVSIN SHLPNEPVDR  240
HVTEGIVMNE SSDESEDSVQ MLLAKAVLAK AKQRKLNKRK MSCHNTRQAK MALEAISPEC  300
VFKNEMSQSF EDKIRAMKSK CRNAEIVSNS LARLSSDNVT SSLRDDFATS HDGIEADLAI  360
REEPLEDGRV LMNGSSRHQV GVSKAGVDLR RDEPHNHHDR VNGLPDEVMK EIPLPGHKQN  420
DVMTQMTTPR VATAQDPILN GVQGEEAERS DQFSPVFEPA LVKSEPGVSF VEDLGPAMVA  480
AGAHVHENKI CANCGLPTDA ENLKSEFVTP EVSEIPKDNN LILDAVTSEE PESTHAKGPN  540
SSAPIPFSGD DSTTEYQKRW AHEAAKSFSA NMKNPSAIIV MRSSFVKNTY ACFVTVKCAG  600
LLPTKPAELS LVDTDGYVRK ANWRPGKRYM LGAGWKDFVE THNVQESDVC VLELIDRSQV  660
NCKLLVHVFR AREMEREHEQ SIPAPGATPV IEASPRARTH AEGKRGRAAN GLLLPGLLPS  720
TRKRRKSIAK SLNNEVVEIG LPVPSTSPDD EVAEPGLTFE RGKPTKQGSA TKRVRRHSMS  780
THTQIKKVAK DETRSSPRGA VVEKQQDLLA TPSQKSHKHY TVKNLIDRRR GLQGVLFLVE  840
LKETVILQGG SKKKPKMSAT QDGRGRWWVP HHHFNHDFSS CYIE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1273280RKLNKRKM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024395177.10.0uncharacterized protein LOC112291658 isoform X1
RefseqXP_024395178.10.0uncharacterized protein LOC112291658 isoform X1
RefseqXP_024395179.10.0uncharacterized protein LOC112291658 isoform X1
TrEMBLA9RXK30.0A9RXK3_PHYPA; Predicted protein
STRINGPP1S34_235V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.15e-08B3 family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]