PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c14_20800V3.3.p | ||||||||
Common Name | PHYPADRAFT_161610 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | B3 | ||||||||
Protein Properties | Length: 885aa MW: 97060.6 Da PI: 8.0732 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 39.2 | 1.2e-12 | 45 | 128 | 8 | 100 |
-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 8 sdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ++k+++l +p +++eh g++ + t +led +g +W v ++ +l++GWk F+ + +L+ gD ++F l+ ++f +v+vf Pp3c14_20800V3.3.p 45 TPSNKNCNLQIPAAYVREHmGMS--IEETYILEDVTGSEWVVIS------SSATLKNGWKAFAVDYQLEKGDQIMFGLVAPKRF--YVSVF 125 4577899************6444..4559***********8877......4567************************987888..***** PP -SS CS B3 98 rks 100 +ks Pp3c14_20800V3.3.p 126 DKS 128 985 PP | |||||||
2 | B3 | 42.3 | 1.3e-13 | 574 | 671 | 11 | 99 |
HHTT-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SE CS B3 11 lksgrlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..se 89 + s+++v+ +f+++ g+ ++++ +l+l d++g + + + r + +ry+l++GWk+Fv+ ++++e D++v++l++r + Pp3c14_20800V3.3.p 574 NPSAIIVMRSSFVKNTyacfvtvkcaGLLPTKPAELSLVDTDGYVRKANW--RPG-KRYMLGAGWKDFVETHNVQESDVCVLELIDRsqVN 661 44566677777775448888888888888999***********9999999..555.59*************************99662455 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +l+v+vfr+ Pp3c14_20800V3.3.p 662 CKLLVHVFRA 671 5678888875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.75E-16 | 32 | 132 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.62E-14 | 34 | 126 | No hit | No description |
SMART | SM01019 | 1.3E-7 | 36 | 128 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.392 | 38 | 128 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.3E-13 | 45 | 128 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.2E-9 | 45 | 127 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.1E-13 | 570 | 681 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.92E-15 | 573 | 677 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.13E-12 | 580 | 670 | No hit | No description |
SMART | SM01019 | 0.0012 | 585 | 672 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-10 | 589 | 671 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 8.741 | 608 | 672 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 885 aa Download sequence Send to blast |
MGKGGGSGGD YEACTVCTRV CQTTHGKGLP HSVPRFLKTI PEYSTPSNKN CNLQIPAAYV 60 REHMGMSIEE TYILEDVTGS EWVVISSSAT LKNGWKAFAV DYQLEKGDQI MFGLVAPKRF 120 YVSVFDKSGM EKVSTRQHLN SMGSTGTAMD KESELAPQVS KPMSGGAEDP CTPMNLAHSK 180 GATRRARSND TSQHNSQLLV SNDVGALPSR NASDQNGNQK GILCNGVSIN SHLPNEPVDR 240 HVTEGIVMNE SSDESEDSVQ MLLAKAVLAK AKQRKLNKRK MSCHNTRQAK MALEAISPEC 300 VFKNEMSQSF EDKIRAMKSK CRNAEIVSNS LARLSSDNVT SSLRDDFATS HDGIEADLAI 360 REEPLEDGRV LMNGSSRHQV GVSKAGVDLR RDEPHNHHDR VNGLPDEVMK EIPLPGHKQN 420 DVMTQMTTPR VATAQDPILN GVQGEEAERS DQFSPVFEPA LVKSEPGVSF VEDLGPAMVA 480 AGAHVHENKI CANCGLPTDA ENLKSEFVTP EVSEIPKDNN LILDAVTSEE PESTHAKGPN 540 SSAPIPFSGD DSTTEYQKRW AHEAAKSFSA NMKNPSAIIV MRSSFVKNTY ACFVTVKCAG 600 LLPTKPAELS LVDTDGYVRK ANWRPGKRYM LGAGWKDFVE THNVQESDVC VLELIDRSQV 660 NCKLLVHVFR AREMEREHEQ SIPAPGATPV IEASPRARTH AEGKRGRAAN GLLLPGLLPS 720 TRKRRKSIAK SLNNEVVEIG LPVPSTSPDD EVAEPGLTFE RGKPTKQGSA TKRVRRHSMS 780 THTQIKKVAK DETRSSPRGA VVEKQQDLLA TPSQKSHKHY TVKNLIDRRR GLQGVLFLVE 840 LKETVILQGG SKKKPKMSAT QDGRGRWWVP HHHFNHDFSS CYIE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 273 | 280 | RKLNKRKM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024395177.1 | 0.0 | uncharacterized protein LOC112291658 isoform X1 | ||||
Refseq | XP_024395178.1 | 0.0 | uncharacterized protein LOC112291658 isoform X1 | ||||
Refseq | XP_024395179.1 | 0.0 | uncharacterized protein LOC112291658 isoform X1 | ||||
TrEMBL | A9RXK3 | 0.0 | A9RXK3_PHYPA; Predicted protein | ||||
STRING | PP1S34_235V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58280.1 | 5e-08 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c14_20800V3.3.p |
Entrez Gene | 5922149 |
Publications ? help Back to Top | |||
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