PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c14_20800V3.1.p

Common Name

PHYPADRAFT_161610

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Protein Properties

Length: 588aa MW: 63918.5 Da PI: 5.9216

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c14_20800V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	40.1	6.7e-13	45	128	8	100
-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 8 sdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ++k+++l +p +++eh g++ + t +led +g +W v ++ +l++GWk F+ + +L+ gD ++F l+ ++f +v+vf Pp3c14_20800V3.1.p 45 TPSNKNCNLQIPAAYVREHmGMS--IEETYILEDVTGSEWVVIS------SSATLKNGWKAFAVDYQLEKGDQIMFGLVAPKRF--YVSVF 125 4577899**********6444..4559*******8877......4567********************987888..*** PP -SS CS B3 98 rks 100 +ks Pp3c14_20800V3.1.p 126 DKS 128 985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.53E-16	32	132	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.30E-14	34	126	No hit	No description
SMART	SM01019	1.3E-7	36	128	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.392	38	128	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	4.1E-13	45	128	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.3E-9	45	127	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 588 aa Download sequence Send to blast
MGKGGGSGGD YEACTVCTRV CQTTHGKGLP HSVPRFLKTI PEYSTPSNKN CNLQIPAAYV 60 REHMGMSIEE TYILEDVTGS EWVVISSSAT LKNGWKAFAV DYQLEKGDQI MFGLVAPKRF 120 YVSVFDKSGM EKVSTRQHLN SMGSTGTAMD KESELAPQVS KPMSGGAEDP CTPMNLAHSK 180 GATRRARSND TSQHNSQLLV SNDVGALPSR NASDQNGNQK GILCNGVSIN SHLPNEPVDR 240 HVTEGIVMNE SSDESEDSVQ MLLAKAVLAK AKQRKLNKRK MSCHNTRQAK MALEAISPEC 300 VFKNEMSQSF EDKIRAMKSK CRNAEIVSNS LARLSSDNVT SSLRDDFATS HDGIEADLAI 360 REEPLEDGRV LMNGSSRHQV GVSKAGVDLR RDEPHNHHDR VNGLPDEVMK EIPLPGHKQN 420 DVMTQMTTPR VATAQDPILN GVQGEEAERS DQFSPVFEPA LVKSEPGVSF VEDLGPAMVA 480 AGAHVHENKI CANCGLPTDA ENLKSEFVTP EVSEIPKDNN LILDAVTSEE PESTHAKGPN 540 SSAPIPFSGD DSTTEYQKRW AHEAAKSFSA NMKNPIRDSQ MCRITSD*

Sequence ? help Back to Top

Protein Sequence Length: 588 aa Download sequence Send to blast

MGKGGGSGGD YEACTVCTRV CQTTHGKGLP HSVPRFLKTI PEYSTPSNKN CNLQIPAAYV  60
REHMGMSIEE TYILEDVTGS EWVVISSSAT LKNGWKAFAV DYQLEKGDQI MFGLVAPKRF  120
YVSVFDKSGM EKVSTRQHLN SMGSTGTAMD KESELAPQVS KPMSGGAEDP CTPMNLAHSK  180
GATRRARSND TSQHNSQLLV SNDVGALPSR NASDQNGNQK GILCNGVSIN SHLPNEPVDR  240
HVTEGIVMNE SSDESEDSVQ MLLAKAVLAK AKQRKLNKRK MSCHNTRQAK MALEAISPEC  300
VFKNEMSQSF EDKIRAMKSK CRNAEIVSNS LARLSSDNVT SSLRDDFATS HDGIEADLAI  360
REEPLEDGRV LMNGSSRHQV GVSKAGVDLR RDEPHNHHDR VNGLPDEVMK EIPLPGHKQN  420
DVMTQMTTPR VATAQDPILN GVQGEEAERS DQFSPVFEPA LVKSEPGVSF VEDLGPAMVA  480
AGAHVHENKI CANCGLPTDA ENLKSEFVTP EVSEIPKDNN LILDAVTSEE PESTHAKGPN  540
SSAPIPFSGD DSTTEYQKRW AHEAAKSFSA NMKNPIRDSQ MCRITSD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	273	280	RKLNKRKM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024395177.1	0.0	uncharacterized protein LOC112291658 isoform X1
Refseq	XP_024395178.1	0.0	uncharacterized protein LOC112291658 isoform X1
Refseq	XP_024395179.1	0.0	uncharacterized protein LOC112291658 isoform X1
TrEMBL	A0A2K1JIM4	0.0	A0A2K1JIM4_PHYPA; Uncharacterized protein
STRING	PP1S34_235V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58280.1	3e-08	B3 family protein

Link Out ? help Back to Top
Phytozome	Pp3c14_20800V3.1.p
Entrez Gene	5922149

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]