PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c14_20800V3.1.p | ||||||||
Common Name | PHYPADRAFT_161610 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | B3 | ||||||||
Protein Properties | Length: 588aa MW: 63918.5 Da PI: 5.9216 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.1 | 6.7e-13 | 45 | 128 | 8 | 100 |
-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 8 sdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ++k+++l +p +++eh g++ + t +led +g +W v ++ +l++GWk F+ + +L+ gD ++F l+ ++f +v+vf Pp3c14_20800V3.1.p 45 TPSNKNCNLQIPAAYVREHmGMS--IEETYILEDVTGSEWVVIS------SSATLKNGWKAFAVDYQLEKGDQIMFGLVAPKRF--YVSVF 125 4577899************6444..4559***********8877......4567************************987888..***** PP -SS CS B3 98 rks 100 +ks Pp3c14_20800V3.1.p 126 DKS 128 985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.53E-16 | 32 | 132 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.30E-14 | 34 | 126 | No hit | No description |
SMART | SM01019 | 1.3E-7 | 36 | 128 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.392 | 38 | 128 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.1E-13 | 45 | 128 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.3E-9 | 45 | 127 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 588 aa Download sequence Send to blast |
MGKGGGSGGD YEACTVCTRV CQTTHGKGLP HSVPRFLKTI PEYSTPSNKN CNLQIPAAYV 60 REHMGMSIEE TYILEDVTGS EWVVISSSAT LKNGWKAFAV DYQLEKGDQI MFGLVAPKRF 120 YVSVFDKSGM EKVSTRQHLN SMGSTGTAMD KESELAPQVS KPMSGGAEDP CTPMNLAHSK 180 GATRRARSND TSQHNSQLLV SNDVGALPSR NASDQNGNQK GILCNGVSIN SHLPNEPVDR 240 HVTEGIVMNE SSDESEDSVQ MLLAKAVLAK AKQRKLNKRK MSCHNTRQAK MALEAISPEC 300 VFKNEMSQSF EDKIRAMKSK CRNAEIVSNS LARLSSDNVT SSLRDDFATS HDGIEADLAI 360 REEPLEDGRV LMNGSSRHQV GVSKAGVDLR RDEPHNHHDR VNGLPDEVMK EIPLPGHKQN 420 DVMTQMTTPR VATAQDPILN GVQGEEAERS DQFSPVFEPA LVKSEPGVSF VEDLGPAMVA 480 AGAHVHENKI CANCGLPTDA ENLKSEFVTP EVSEIPKDNN LILDAVTSEE PESTHAKGPN 540 SSAPIPFSGD DSTTEYQKRW AHEAAKSFSA NMKNPIRDSQ MCRITSD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 273 | 280 | RKLNKRKM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024395177.1 | 0.0 | uncharacterized protein LOC112291658 isoform X1 | ||||
Refseq | XP_024395178.1 | 0.0 | uncharacterized protein LOC112291658 isoform X1 | ||||
Refseq | XP_024395179.1 | 0.0 | uncharacterized protein LOC112291658 isoform X1 | ||||
TrEMBL | A0A2K1JIM4 | 0.0 | A0A2K1JIM4_PHYPA; Uncharacterized protein | ||||
STRING | PP1S34_235V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58280.1 | 3e-08 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c14_20800V3.1.p |
Entrez Gene | 5922149 |
Publications ? help Back to Top | |||
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