PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c14_20740V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 527aa    MW: 57915.5 Da    PI: 5.7206
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c14_20740V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.82e-13458503655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er+RR+ri +++ +L++l+P+     +k  + a++L +AveY+k+Lq
  Pp3c14_20740V3.3.p 458 SIAERNRRSRISERMKKLQDLVPNM----DKQTNTADMLDEAVEYVKHLQ 503
                         689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.675452502IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.02E-16454518IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.93E-12456507No hitNo description
Gene3DG3DSA:4.10.280.102.2E-17457522IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-15458508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-10458503IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MGSDIALTET DLSGMLQTNH PSQGHISLTN MLSSNSVDPN STGRDLFSGP LPYSPIQRQQ  60
SIGGQGQLTP SMNMNMNMQS GSLERPSMSS LGSGGSQSSM SQSTQWPFAS DEKWEMDCKN  120
EVLDSSIRLN AGGFGARMDA PLQPLNSSLA RTSNLQRYHS APSSILQSLA EFNEESFPHI  180
SSPLGNSADS NRDDHPMFFN ENLVPIMESA PSRWTQQSEP EKVALRSNAM SSAEQYFAIQ  240
ADKARLNALQ DSAMAKENME NSLSRMQNIA RGAAELRGGG PVDVSLFRNR SLNNNLLRQS  300
SSPADLLAAI NEREDEMNPK MQPLRSQDDS LSVGSFGEDR SNKKSIDNMY SNPMYVFNDA  360
MMGGGGVWGM PTNLKANLGG KRVRFPEEMM DDSDLLRDNS QNPTGGRINS LTRHQSLPTN  420
INPGDPAAAM GMGYDDLLDL YSPCKTRARR GYATHPRSIA ERNRRSRISE RMKKLQDLVP  480
NMDKQTNTAD MLDEAVEYVK HLQTQVKDLS ETIVRLKNSI RAQTAS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.24551e-108gametophore
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024395286.10.0transcription factor bHLH122-like isoform X1
TrEMBLA0A2K1JIK70.0A0A2K1JIK7_PHYPA; Uncharacterized protein
STRINGPP1S34_227V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.12e-33bHLH family protein