PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c14_19470V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

bZIP

Protein Properties

Length: 291aa MW: 31792.6 Da PI: 6.8968

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c14_19470V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.1	5e-10	126	170	7	51
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 7 errkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 +r NReA r++R++Kka ++ Lee v L + N++L k+l+ Pp3c14_19470V3.1.p 126 KKRPLGNREAVRKYREKKKAHTAYLEEQVHHLRGLNQQLVKRLQG 170 577788**********************************99974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	6.3E-13	115	188	No hit	No description
SMART	SM00338	1.3E-10	120	187	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	3.0E-14	124	176	IPR004827	Basic-leucine zipper domain
CDD	cd14686	5.71E-12	126	178	No hit	No description
SuperFamily	SSF57959	1.25E-7	126	170	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MACRRRMDSP PMLCKTSADN PEGVIRGRGY QMDDGELEFT DHDVFAGCSL CDLPSTPTTM 60 GSMENFLEEV LRSTHACTHT HTCNPPGPDN THTHTCYHTH THLFAAGEED TSADKSETPT 120 SSHNSKKRPL GNREAVRKYR EKKKAHTAYL EEQVHHLRGL NQQLVKRLQG QASLESEVIR 180 LRSLLSEFRG RIDAEIGSFP VQASKCPTSS ALVTKSLPNG DCEVQSLSGG FCVNTVTVPC 240 VTDVPCLHTA TSGNSLARPP MTPSSEPAKW NRNSPMSDCV LSDSTVMHLS *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.10652	0.0	protonema

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269\|PubMed:20479230, ECO:0000269\|PubMed:26306426}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by zinc deficiency. {ECO:0000269\|PubMed:20479230}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024394677.1	0.0	basic leucine zipper 23-like isoform X1
Swissprot	Q8GTS2	2e-60	BZP23_ARATH; Basic leucine zipper 23
TrEMBL	A0A2K1JID9	0.0	A0A2K1JID9_PHYPA; Uncharacterized protein
STRING	PP1S34_90V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1970	15	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16770.1	9e-53	bZIP family protein

Link Out ? help Back to Top
Phytozome	Pp3c14_19470V3.1.p

Publications ? help Back to Top
Azevedo H, et al. Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply. Genom Data, 2016. 7: p. 256-8 [PMID:26981422] Castro PH, et al. Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants. Sci Rep, 2017. 7(1): p. 3806 [PMID:28630437] Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE F-group bZIPs in barley-a role in Zn deficiency. Plant Cell Environ., 2017. 40(11): p. 2754-2770 [PMID:28763829] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]