PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c14_10320V3.4.p
Common NamePHYPADRAFT_110694
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family DBB
Protein Properties Length: 339aa    MW: 36188 Da    PI: 7.3568
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c14_10320V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.22.2e-05446541
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                         C+ +e++++   C  ++  lC  C +  H        H +vp
  Pp3c14_10320V3.4.p  4 HCDVCEKNKAAVMCCADEAALCTACDTRVHAAnklankHVRVP 46
                        6******99*********************6577888887777 PP
2zf-B_box30.95.6e-105294238
            zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                        e+++C+ +++k   +fC +++ llC+dC +++H++      H+
  Pp3c14_10320V3.4.p 52 EPPRCDICQDKAGFFFCLEDRALLCRDCDVSIHSSnklssnHQ 94
                        5799*******9999******************7766666676 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.2E-9147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.025147IPR000315B-box-type zinc finger
CDDcd000217.71E-8347No hitNo description
SuperFamilySSF578453.48E-54789No hitNo description
SMARTSM003363.7E-175198IPR000315B-box-type zinc finger
PROSITE profilePS501199.1435198IPR000315B-box-type zinc finger
PfamPF006434.8E-85394IPR000315B-box-type zinc finger
CDDcd000216.42E-105498No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009640Biological Processphotomorphogenesis
GO:0005634Cellular Componentnucleus
GO:0000989Molecular Functiontranscription factor activity, transcription factor binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MRVHCDVCEK NKAAVMCCAD EAALCTACDT RVHAANKLAN KHVRVPLVGQ LEPPRCDICQ  60
DKAGFFFCLE DRALLCRDCD VSIHSSNKLS SNHQRFLITG TRVGLDAVSG QEGTERMSEE  120
SPRVSSLTTV TKSPSPPASK SSPSSASKMN MVSVKPQPAP TNATSNANPS WLSNGGRYTE  180
REKTKLLSVG TTSANVVDPH SSSFGRRNSI PADLSDAVPV WGVDELLNLP ELADGYHLGD  240
IGSSKADMNN LGDCDWMADL SMFEEQIYAE TLRKVPQMFA PAPTAGLSRG GRATVLSKGK  300
GKQEAAIVPQ FDDAFVVPDL GLSASALLPA PVAKRRRT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.130910.0gametophore| protonema| sporophyte
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024395677.10.0B-box zinc finger protein 22-like
RefseqXP_024395678.10.0B-box zinc finger protein 22-like
RefseqXP_024395679.10.0B-box zinc finger protein 22-like
RefseqXP_024395680.10.0B-box zinc finger protein 22-like
RefseqXP_024395681.10.0B-box zinc finger protein 22-like
RefseqXP_024395683.10.0B-box zinc finger protein 22-like
TrEMBLA9U4E40.0A9U4E4_PHYPA; Predicted protein
STRINGPP1S509_13V6.30.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.15e-47light-regulated zinc finger protein 1
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]