PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c14_10320V3.3.p | ||||||||
Common Name | PHYPADRAFT_110694 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | DBB | ||||||||
Protein Properties | Length: 339aa MW: 36188 Da PI: 7.3568 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 16.2 | 2.2e-05 | 4 | 46 | 5 | 41 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+ +e++++ C ++ lC C + H H +vp Pp3c14_10320V3.3.p 4 HCDVCEKNKAAVMCCADEAALCTACDTRVHAAnklankHVRVP 46 6******99*********************6577888887777 PP | |||||||
2 | zf-B_box | 30.9 | 5.6e-10 | 52 | 94 | 2 | 38 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 e+++C+ +++k +fC +++ llC+dC +++H++ H+ Pp3c14_10320V3.3.p 52 EPPRCDICQDKAGFFFCLEDRALLCRDCDVSIHSSnklssnHQ 94 5799*******9999******************7766666676 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.2E-9 | 1 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.025 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.71E-8 | 3 | 47 | No hit | No description |
SuperFamily | SSF57845 | 3.48E-5 | 47 | 89 | No hit | No description |
SMART | SM00336 | 3.7E-17 | 51 | 98 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.143 | 51 | 98 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 4.8E-8 | 53 | 94 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.42E-10 | 54 | 98 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000989 | Molecular Function | transcription factor activity, transcription factor binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MRVHCDVCEK NKAAVMCCAD EAALCTACDT RVHAANKLAN KHVRVPLVGQ LEPPRCDICQ 60 DKAGFFFCLE DRALLCRDCD VSIHSSNKLS SNHQRFLITG TRVGLDAVSG QEGTERMSEE 120 SPRVSSLTTV TKSPSPPASK SSPSSASKMN MVSVKPQPAP TNATSNANPS WLSNGGRYTE 180 REKTKLLSVG TTSANVVDPH SSSFGRRNSI PADLSDAVPV WGVDELLNLP ELADGYHLGD 240 IGSSKADMNN LGDCDWMADL SMFEEQIYAE TLRKVPQMFA PAPTAGLSRG GRATVLSKGK 300 GKQEAAIVPQ FDDAFVVPDL GLSASALLPA PVAKRRRT* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.13091 | 0.0 | gametophore| protonema| sporophyte |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024395677.1 | 0.0 | B-box zinc finger protein 22-like | ||||
Refseq | XP_024395678.1 | 0.0 | B-box zinc finger protein 22-like | ||||
Refseq | XP_024395679.1 | 0.0 | B-box zinc finger protein 22-like | ||||
Refseq | XP_024395680.1 | 0.0 | B-box zinc finger protein 22-like | ||||
Refseq | XP_024395681.1 | 0.0 | B-box zinc finger protein 22-like | ||||
Refseq | XP_024395683.1 | 0.0 | B-box zinc finger protein 22-like | ||||
TrEMBL | A9U4E4 | 0.0 | A9U4E4_PHYPA; Predicted protein | ||||
STRING | PP1S509_13V6.3 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78600.1 | 5e-47 | light-regulated zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c14_10320V3.3.p |
Entrez Gene | 5948936 |
Publications ? help Back to Top | |||
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