PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c13_7150V3.1.p
Common NamePHYPADRAFT_75378
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family TALE
Protein Properties Length: 686aa    MW: 75690.7 Da    PI: 9.7962
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c13_7150V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.54.5e-085746111954
                        HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        Fe   ++yp+++++  LA++++L+ +qV++WF N R +
  Pp3c13_7150V3.1.p 574 FEHflKPYPQHRDKCWLAEQTSLSRSQVTNWFINARVR 611
                        6644589*****************************88 PP
2BELL45.91.5e-15452521372
               BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                        +e q++k kL  ll  V+ +Y+ y+ ++  + + F++  g + + +Yt+l l+a+Sr Fr  kd i+ q+
  Pp3c13_7150V3.1.p 452 AESQSRKEKLEVLLRSVESNYEAYRANVLEMRNNFDQFGGREGSLLYTALGLQAMSRRFRICKDGITRQL 521
                        689****************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075268.3E-19344518IPR006563POX domain
SMARTSM005740.007383519IPR006563POX domain
SMARTSM003898.1E-8549619IPR001356Homeobox domain
SuperFamilySSF466891.2E-15559621IPR009057Homeodomain-like
CDDcd000865.35E-10560616No hitNo description
Gene3DG3DSA:1.10.10.602.5E-23560620IPR009057Homeodomain-like
PfamPF059201.9E-15572611IPR008422Homeobox KN domain
PROSITE profilePS5007110.689574615IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MSLAMMHEVG LPLREYSRRG GDPAAAVEMR LFATASDGAL VGLSPARLVC TPALQSSREV  60
ENLHHTHKKR EIPCCPCRCV TGIISRGLSR APPVGSSSLM EVSRTQLTAS AGASPEGRVV  120
RRIAQISAET HDLLGTLDQL ADSGTKLVEA AGVDLQSSVP EIHGTGDSAQ PVAEVVKILK  180
AGSYLSRRVS QVCQPGFVHG KTSLSLPPHQ PPLTSYSAVH QAHAAWLKNQ TTDVLHITAI  240
RNSKAVSCLA TMPMAQQTSS PSSHKHALPC TVDRNSKRVC VGLDDRRFKR AADERRPNRL  300
GREASPNLNF RNTECGDIPI AIAANTHVQP AALIRNTGKP KPSMILNSKF LAPIRSLLRF  360
HYFQGHPKKR RRTAAGQHGS TPASETREIP ASRHTGQSAE VHDGHPEPLN HGLKPPQVPG  420
SLVGTNLNAA AALDTQRVEE TAFDIDEAED LAESQSRKEK LEVLLRSVES NYEAYRANVL  480
EMRNNFDQFG GREGSLLYTA LGLQAMSRRF RICKDGITRQ LRVATREMDL SSQLRQARCK  540
VHPERQLLKP NHRGPDLHAR LPDSATDILR RWLFEHFLKP YPQHRDKCWL AEQTSLSRSQ  600
VTNWFINARV RLWKPMVEEL YEQIQREDEA EQAARESSAN SRQSSQDGIY SSGSHHNVEH  660
DFMLQAGTIR GTRSSALHPV IIRTS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024392288.10.0uncharacterized protein LOC112290349 isoform X1
TrEMBLA0A2K1JL450.0A0A2K1JL45_PHYPA; Uncharacterized protein
STRINGPP1S52_231V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.18e-37BEL1-like homeodomain 7
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]