 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Pp3c13_6470V3.9.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
| Family |
NAC |
| Protein Properties |
Length: 387aa MW: 43678.7 Da PI: 7.6716 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pp3c13_6470V3.9.p | genome | COSMOSS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 105.3 | 8e-33 | 75 | 150 | 52 | 128 |
NAM 52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
+++++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk++++ +++++g++ktLvfykgrap+g+ktdW+mhe+rl
Pp3c13_6470V3.9.p 75 PEHQSDWYFFSHKDKKYPTGNRANRATTAGFWKATGRDKPIHT-QRQVIGMRKTLVFYKGRAPNGQKTDWIMHEFRL 150
456789*************************************.999****************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 387 aa
Download sequence Send
to blast |
MVSIGILKVV WCSVQPPHLV SSKNKHLKQY YPLNCDQHKL KSMFSSSIDS MKWSSSIDKN 60
LLHRSEVCRI GDDAPEHQSD WYFFSHKDKK YPTGNRANRA TTAGFWKATG RDKPIHTQRQ 120
VIGMRKTLVF YKGRAPNGQK TDWIMHEFRL DDCPGASPNY ESDGWVVCRV FRKMKNFKTK 180
SQETSCSLEE DQVLLPELMS HSEGGGGPSS QGGEVQYNPH LHHFSFTCKQ ELSVEDYRTP 240
ISSDPFMENL HLHELHRSIE PSCHQNYLPP SVSSTFRSLQ PACTSGRSSR DYAEYSLVPF 300
PLESTSLRDF DDARSSVTQD GSSLTALAHH NDAEYWMLDG GISKAGARRD QTLAAVTYHV 360
DLKSRQSSDN SSASTNHEGF GHLWNV*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 2e-30 | 50 | 173 | 45 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-30 | 50 | 173 | 45 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-30 | 50 | 173 | 45 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-30 | 50 | 173 | 45 | 165 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 2e-30 | 50 | 173 | 48 | 168 | NAC domain-containing protein 19 |
| 3swm_B | 2e-30 | 50 | 173 | 48 | 168 | NAC domain-containing protein 19 |
| 3swm_C | 2e-30 | 50 | 173 | 48 | 168 | NAC domain-containing protein 19 |
| 3swm_D | 2e-30 | 50 | 173 | 48 | 168 | NAC domain-containing protein 19 |
| 3swp_A | 2e-30 | 50 | 173 | 48 | 168 | NAC domain-containing protein 19 |
| 3swp_B | 2e-30 | 50 | 173 | 48 | 168 | NAC domain-containing protein 19 |
| 3swp_C | 2e-30 | 50 | 173 | 48 | 168 | NAC domain-containing protein 19 |
| 3swp_D | 2e-30 | 50 | 173 | 48 | 168 | NAC domain-containing protein 19 |
| 4dul_A | 2e-30 | 50 | 173 | 45 | 165 | NAC domain-containing protein 19 |
| 4dul_B | 2e-30 | 50 | 173 | 45 | 165 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AB898081 | 0.0 | AB898081.1 Physcomitrella patens PpVNS1 mRNA for NAC transcription factor PpVNS1, complete cds, ecotype: Gransden 2004. |
