PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c13_6470V3.9.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | NAC | ||||||||
Protein Properties | Length: 387aa MW: 43678.7 Da PI: 7.6716 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 105.3 | 8e-33 | 75 | 150 | 52 | 128 |
NAM 52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk++++ +++++g++ktLvfykgrap+g+ktdW+mhe+rl Pp3c13_6470V3.9.p 75 PEHQSDWYFFSHKDKKYPTGNRANRATTAGFWKATGRDKPIHT-QRQVIGMRKTLVFYKGRAPNGQKTDWIMHEFRL 150 456789*************************************.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 36.089 | 14 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.6E-16 | 66 | 150 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 6.8E-37 | 76 | 173 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MVSIGILKVV WCSVQPPHLV SSKNKHLKQY YPLNCDQHKL KSMFSSSIDS MKWSSSIDKN 60 LLHRSEVCRI GDDAPEHQSD WYFFSHKDKK YPTGNRANRA TTAGFWKATG RDKPIHTQRQ 120 VIGMRKTLVF YKGRAPNGQK TDWIMHEFRL DDCPGASPNY ESDGWVVCRV FRKMKNFKTK 180 SQETSCSLEE DQVLLPELMS HSEGGGGPSS QGGEVQYNPH LHHFSFTCKQ ELSVEDYRTP 240 ISSDPFMENL HLHELHRSIE PSCHQNYLPP SVSSTFRSLQ PACTSGRSSR DYAEYSLVPF 300 PLESTSLRDF DDARSSVTQD GSSLTALAHH NDAEYWMLDG GISKAGARRD QTLAAVTYHV 360 DLKSRQSSDN SSASTNHEGF GHLWNV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-30 | 50 | 173 | 45 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-30 | 50 | 173 | 45 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-30 | 50 | 173 | 45 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-30 | 50 | 173 | 45 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-30 | 50 | 173 | 48 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-30 | 50 | 173 | 48 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-30 | 50 | 173 | 48 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-30 | 50 | 173 | 48 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-30 | 50 | 173 | 48 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-30 | 50 | 173 | 48 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-30 | 50 | 173 | 48 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-30 | 50 | 173 | 48 | 168 | NAC domain-containing protein 19 |
4dul_A | 2e-30 | 50 | 173 | 45 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-30 | 50 | 173 | 45 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.14709 | 0.0 | protonema| sporophyte |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB898081 | 0.0 | AB898081.1 Physcomitrella patens PpVNS1 mRNA for NAC transcription factor PpVNS1, complete cds, ecotype: Gransden 2004. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024392098.1 | 0.0 | NAC domain-containing protein 76-like | ||||
Refseq | XP_024392099.1 | 0.0 | NAC domain-containing protein 76-like | ||||
Refseq | XP_024392101.1 | 0.0 | NAC domain-containing protein 76-like | ||||
TrEMBL | X5II81 | 0.0 | X5II81_PHYPA; NAC transcription factor PpVNS1 | ||||
STRING | PP1S182_37V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62700.1 | 2e-50 | Arabidopsis NAC domain containing protein 26 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c13_6470V3.9.p |